Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007457.1

Orthogroup ID

OG0031389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 644

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 643 bp

atgttaacttcagttacaaagacgcaccctcaatgggcgcatcttgtgtcagcagttgatcatagagtagatagggctctggccattctaaggccccaggctatagcagatcacagggcacttcttacttcacttggatggccaccacctctttcctcaactccagattcagggagatcaaatgatgttcaaaatcctcttttcacaatgcaaggagaccttaaagaccagtactatgaaaactttcttgccctctgcagcctacaggagttgcaaagacgaagaaaattgcgacaacttcagggatataatcgcgaacttgctctgtaccagccactttgggtgattgaagagcttgtaaatcccatagcattggcatcccaacgccatttctcaaaatggatcgacaagccagaatttatatttgctcttgtctacaagatcaccagggattatgttgactctatggatgagctattgcaaccattggttgatgaagcaatgttaactgggtacagttgcagagaagaatggatttctggaatggtttcctccttatcgatgtacttggcaaaagagatattcccaaaatacgctcaacccgatgaggatggtgtaatgggtactcaggaacaggctaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

214

Amino Acids

24.61

Weight (kDa)

5.55

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031389)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8356833.1_g000001 Rmu_sc0007457.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	315
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	2 cut(s)	81, 140
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	5 cut(s)	233, 329, 515, 566, 625
AfiI	CCNNNNNNNGG	3 cut(s)	34, 90, 170
AgsI	TTSAA	2 cut(s)	191, 350
AjnI	CCWGG	2 cut(s)	96, 446
AluBI	AGCT	2 cut(s)	355, 475
AluI	AGCT	2 cut(s)	355, 475
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	3 cut(s)	81, 92, 140
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	243, 547
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	355, 436
BaeGI	GKGCMC	1 cut(s)	121
BalI	TGGCCA	2 cut(s)	83, 142
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	132, 605
BciT130I	CCWGG	2 cut(s)	98, 448
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	210
BfmI	CTRYAG	3 cut(s)	102, 256, 263
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	98, 448
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	98, 448
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	49, 386
BmuI	ACTGGG	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	96, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 90, 170
Bse1I	ACTGG	2 cut(s)	229, 514
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	98, 448
BseCI	ATCGAT	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	96, 447
BseGI	GGATG	4 cut(s)	143, 377, 475, 616
BseLI	CCNNNNNNNGG	3 cut(s)	34, 90, 170
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	229, 514
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	83, 94, 142
BshVI	ATCGAT	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	34, 90, 170
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	83, 94, 142
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	79, 121
Bsp143I	GATC	5 cut(s)	58, 109, 176, 402, 441
Bsp68I	TCGCGA	1 cut(s)	315
BspANI	GGCC	3 cut(s)	83, 94, 142
BspCNI	CTCAG	1 cut(s)	640
BspDI	ATCGAT	1 cut(s)	560
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	229, 514
BssECI	CCNNGG	2 cut(s)	96, 447
BssMI	GATC	5 cut(s)	58, 109, 176, 402, 441
Bst2UI	CCWGG	2 cut(s)	98, 448
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	89, 627
BstF5I	GGATG	4 cut(s)	143, 377, 475, 616
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	5 cut(s)	61, 112, 179, 405, 444
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	5 cut(s)	58, 109, 176, 402, 441
BstNI	CCWGG	2 cut(s)	98, 448
BstSCI	CCNGG	2 cut(s)	96, 446
BstSFI	CTRYAG	3 cut(s)	102, 256, 263
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	560
BsuRI	GGCC	3 cut(s)	83, 94, 142
BsuTUI	ATCGAT	1 cut(s)	560
BtsCI	GGATG	4 cut(s)	143, 377, 475, 616
BtuMI	TCGCGA	1 cut(s)	315
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	560
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	5 cut(s)	232, 328, 514, 565, 624
CviQI	GTAC	5 cut(s)	232, 328, 514, 565, 624
DdeI	CTNAG	2 cut(s)	89, 627
DpnI	GATC	5 cut(s)	60, 111, 178, 404, 443
DpnII	GATC	5 cut(s)	58, 109, 176, 402, 441
EaeI	YGGCCR	2 cut(s)	81, 140
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	96, 446
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	8 cut(s)	63, 104, 237, 309, 368, 422, 456, 467
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	259
FokI	GGATG	4 cut(s)	150, 364, 482, 623
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	259
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	83, 94, 142
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	3 cut(s)	6, 460, 507
HindII	GTYRAC	3 cut(s)	6, 460, 507
HinfI	GANTC	2 cut(s)	167, 461
HpaI	GTTAAC	2 cut(s)	6, 507
HphI	GGTGA	2 cut(s)	355, 436
Hpy166II	GTNNAC	4 cut(s)	6, 436, 460, 507
Hpy188III	TCNNGA	4 cut(s)	164, 314, 540, 629
Hpy8I	GTNNAC	4 cut(s)	6, 436, 460, 507
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	5 cut(s)	211, 258, 274, 481, 522
HpyF3I	CTNAG	2 cut(s)	89, 627
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	58
KspAI	GTTAAC	2 cut(s)	6, 507
Kzo9I	GATC	5 cut(s)	58, 109, 176, 402, 441
LguI	GCTCTTC	1 cut(s)	345
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	2 cut(s)	49, 386
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	5 cut(s)	60, 111, 178, 404, 443
MboI	GATC	5 cut(s)	58, 109, 176, 402, 441
MboII	GAAGA	3 cut(s)	294, 362, 539
MhlI	GDGCHC	2 cut(s)	79, 121
MlsI	TGGCCA	2 cut(s)	83, 142
MluCI	AATT	2 cut(s)	287, 416
MluNI	TGGCCA	2 cut(s)	83, 142
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	7 cut(s)	39, 159, 166, 207, 263, 562, 601
Mox20I	TGGCCA	2 cut(s)	83, 142
MroXI	GAANNNNTTC	2 cut(s)	243, 547
MscI	TGGCCA	2 cut(s)	83, 142
MseI	TTAA	3 cut(s)	5, 222, 506
MslI	CAYNNNNRTG	1 cut(s)	136
Msp20I	TGGCCA	2 cut(s)	83, 142
MspR9I	CCNGG	2 cut(s)	98, 448
MvaI	CCWGG	2 cut(s)	98, 448
MvnI	CGCG	1 cut(s)	315
NdeII	GATC	5 cut(s)	58, 109, 176, 402, 441
NlaIV	GGNNCC	1 cut(s)	95
NruI	TCGCGA	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PdmI	GAANNNNTTC	2 cut(s)	243, 547
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	96, 446
PspGI	CCWGG	2 cut(s)	96, 446
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	260
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	5 cut(s)	233, 329, 515, 566, 625
RsaNI	GTAC	5 cut(s)	232, 328, 514, 565, 624
RseI	CAYNNNNRTG	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	5, 222, 506
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	5 cut(s)	58, 109, 176, 402, 441
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	98, 448
SduI	GDGCHC	2 cut(s)	79, 121
SetI	ASST	4 cut(s)	151, 222, 357, 477
SfaNI	GCATC	2 cut(s)	49, 386
SfcI	CTRYAG	3 cut(s)	102, 256, 263
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	287, 416
StyD4I	CCNGG	2 cut(s)	96, 446
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	2 cut(s)	405, 560
TasI	AATT	2 cut(s)	287, 416
TatI	WGTACW	2 cut(s)	231, 564
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	5, 222, 506
Tru9I	TTAA	3 cut(s)	5, 222, 506
TseI	GCWGC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	252, 510
XapI	RAATTY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	2 cut(s)	243, 547
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.