Rmu_sc0007942.1_g000009

beta-1,3-galactosyltransferase 16

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007942.1
Physical Location & Seq
Forward (+)
25346 .. 28645
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007942.1_g000009.1.cds

Sequence Viewer

Length: 1917 bp
atgaggaagtggtctggagggttgttgatcattactcttgctatgatattggtttttcgttacagaagcattgccaaaattgaacccccggagcaatcaccaaagcagtcaccgaagcaatcgactgctgaattctttggaaacaatcctgacaatgattctcttgggacgtttcctgaggtaaaagtgatagtgcagccaaaaccacctgagaaaccacatttgatagaggtagatgggcttgatgatctgtttgcttcacatgacatctttgaagaagagaacaaggccttgcttgtatggagtcacttgcgtcccctactctccaggtcagatgctttgcctgaaacagctcgaggggtaaaagaggcttcgatagcatggaaagacttgctgtctataattgacaaggacaaggcttcaaaactgaacaaaagtgaagatcaagaagacaaatcctgtcctttttctgtaaatgcactcgataatatagcatcaggagatgggaatattcttgaaatcccttgtggcctcattgatgattcttccatttctttggttggcattcctgatgggcgctttagaagctttcagattgaacttctaggtttgcagttcgcgggagagcctgagcctcctgtcatcttgcattacagtgtcagccttcctgctgacaacatgacagaggagccatttgtaatccaaaacagttggaataatgaacttggttggggcaaagaggaaagatgtccttttcacagatctgctagcaatcttaaagtcgatggacttgttctttgcaatgaacaagttgtcagaagctctttggacgaaaatctaaatatgagtcagcctagtagtgacatgttcaccaatgtttccagggtaagtgctcatggagatgctaatttcccattcgttgaagggaatccatttactgcaacactgtgggttggtttagagggatttcacatgactgtcaatggaaggcatgaaacatcttttgcgtatagggagaaacttgaaccatggtcagtttccaaagttaaagtggctggtggtttgaatgtcttatcggccttagctaaaggcttgcctatttccgaggatcatgacttagttgttgatgttgagcacctgaaagctccaccccttttgaagaaaaggcttttgatgttggttggggttttctcaacaggaaataattttgagcgtagaatggcattgaggaggacttggatgcagtacgaggctgtgcgttctggagatgtggctgtccgatttttcattggccttcacaagaacagtcaagttaattttgaactgtggcgagaagctcaagcttatggagatatccaactgatgccatttgttgattattacagcttgataagcctgaagacaatcgcaatttgcatttttggtaccaaaatccttcccgctaaatatatcatgaaaacagatgatgatgcttttgttagaattgacgaggtcatctccagcctcaagggaaagacaactaaaggtctcttgtatggtcttatatcatttgaatcatcacctgacagagacagagacagcaaatggtacattagtgatgaggaatggccacatgcgggttaccctccatgggcacatggtccaggttacatcatctctagggacattgtcaaattcattgttcgtagccaccacgaaagggacctcaagctgtttaaactggaggatgttgcaatgggcatatggattgaacaattcaagaacagaggtcaagaagtgaattacgttacggatgagaggttttacaatgctggatgtgagtcaaactatattcttgctcattaccaaacccccaggttggtgttgtgcctttgggagaagctgcagaaagagcaccaggccaactgctgtgagtaa

Protein Analysis

638

Amino Acids

72.16

Weight (kDa)

5.51

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1424
AccB1I GGYRCC 1 cut(s) 1424
AccII CGCG 1 cut(s) 620
AciI CCGC 3 cut(s) 620, 1440, 1616
AclWI GGATC 1 cut(s) 1116
AcoI YGGCCR 1 cut(s) 1607
AcsI RAATTY 2 cut(s) 131, 1673
AcuI CTGAAG 1 cut(s) 1418
AfaI GTAC 3 cut(s) 1247, 1426, 1589
AfiI CCNNNNNNNGG 4 cut(s) 1616, 1630, 1699, 1858
AflIII ACRYGT 1 cut(s) 864
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 5 cut(s) 326, 881, 1642, 1853, 1896
Alw21I GWGCWC 3 cut(s) 895, 1137, 1896
Alw26I GTCTC 3 cut(s) 1532, 1563, 1569
AlwI GGATC 1 cut(s) 1116
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 6 cut(s) 288, 529, 1077, 1291, 1607, 1899
ApeKI GCWGC 2 cut(s) 196, 1882
ApoI RAATTY 2 cut(s) 131, 1673
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
Asp718I GGTACC 1 cut(s) 1424
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 1640, 1702
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 4 cut(s) 90, 102, 862, 1551
AsuNHI GCTAGC 1 cut(s) 767
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 2 cut(s) 1640, 1702
AxyI CCTNAGG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 1636
BaeI ACNNNNGTAYC 2 cut(s) 1579, 1612
BalI TGGCCA 1 cut(s) 1609
BanI GGYRCC 1 cut(s) 1424
BbsI GAAGAC 2 cut(s) 456, 1406
Bbv12I GWGCWC 3 cut(s) 895, 1137, 1896
BbvI GCAGC 2 cut(s) 208, 1869
BccI CCATC 4 cut(s) 230, 497, 566, 779
BciT130I CCWGG 5 cut(s) 328, 883, 1644, 1855, 1898
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 3 cut(s) 1532, 1563, 1569
BfaI CTAG 4 cut(s) 605, 768, 855, 1659
BfmI CTRYAG 1 cut(s) 1883
BfoI RGCGCY 1 cut(s) 580
BglII AGATCT 1 cut(s) 761
BisI GCNGC 2 cut(s) 197, 1883
BlsI GCNGC 2 cut(s) 198, 1884
Bme1390I CCNGG 6 cut(s) 89, 328, 883, 1644, 1855, 1898
Bme18I GGWCC 2 cut(s) 1640, 1702
BmeRI GACNNNNNGTC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 1640, 1702
BmiI GGNNCC 3 cut(s) 690, 1426, 1703
BmrFI CCNGG 6 cut(s) 89, 328, 883, 1644, 1855, 1898
BmsI GCATC 6 cut(s) 325, 503, 892, 1230, 1353, 1459
BmtI GCTAGC 1 cut(s) 771
BpiI GAAGAC 2 cut(s) 456, 1406
BplI GAGNNNNNCTC 2 cut(s) 1481, 1513
BpmI CTGGAG 5 cut(s) 36, 310, 1284, 1483, 1742
Bpu10I CCTNAGC 2 cut(s) 630, 1081
BpuEI CTTGAG 3 cut(s) 1323, 1490, 1691
BpuMI CCSGG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 1532
BsaJI CCNNGG 6 cut(s) 87, 882, 1028, 1104, 1628, 1853
Bsc4I CCNNNNNNNGG 4 cut(s) 1616, 1630, 1699, 1858
Bse1I ACTGG 1 cut(s) 1725
Bse21I CCTNAGG 1 cut(s) 177
Bse3DI GCAATG 3 cut(s) 69, 808, 1740
BseBI CCWGG 5 cut(s) 328, 883, 1644, 1855, 1898
BseDI CCNNGG 6 cut(s) 87, 882, 1028, 1104, 1628, 1853
BseGI GGATG 4 cut(s) 1245, 1732, 1798, 1820
BseLI CCNNNNNNNGG 4 cut(s) 1616, 1630, 1699, 1858
BseMI GCAATG 3 cut(s) 69, 808, 1740
BseMII CTCAG 3 cut(s) 168, 201, 621
BseNI ACTGG 1 cut(s) 1725
BseRI GAGGAG 2 cut(s) 701, 1243
BseSI GKGCMC 1 cut(s) 1636
BseXI GCAGC 2 cut(s) 208, 1869
BsgI GTGCAG 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 620
BshFI GGCC 6 cut(s) 290, 531, 1079, 1293, 1609, 1901
BshNI GGYRCC 1 cut(s) 1424
BsiHKAI GWGCWC 3 cut(s) 895, 1137, 1896
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 4 cut(s) 181, 300, 1676, 1715
BslI CCNNNNNNNGG 4 cut(s) 1616, 1630, 1699, 1858
BsmAI GTCTC 3 cut(s) 1532, 1563, 1569
BsmFI GGGAC 4 cut(s) 181, 300, 1676, 1715
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 6 cut(s) 290, 531, 1079, 1293, 1609, 1901
Bso31I GGTCTC 1 cut(s) 1532
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 4 cut(s) 895, 1137, 1636, 1896
Bsp143I GATC 5 cut(s) 27, 247, 442, 761, 1108
Bsp19I CCATGG 2 cut(s) 1028, 1628
BspACI CCGC 3 cut(s) 620, 1440, 1616
BspANI GGCC 6 cut(s) 290, 531, 1079, 1293, 1609, 1901
BspCNI CTCAG 3 cut(s) 169, 202, 622
BspFNI CGCG 1 cut(s) 620
BspHI TCATGA 2 cut(s) 1111, 1452
BspLI GGNNCC 3 cut(s) 690, 1426, 1703
BspMAI CTGCAG 1 cut(s) 1887
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 1 cut(s) 1116
BspT107I GGYRCC 1 cut(s) 1424
BspTNI GGTCTC 1 cut(s) 1532
BsrDI GCAATG 3 cut(s) 69, 808, 1740
BsrI ACTGG 1 cut(s) 1725
BssECI CCNNGG 6 cut(s) 87, 882, 1028, 1104, 1628, 1853
BssMI GATC 5 cut(s) 27, 247, 442, 761, 1108
BssT1I CCWWGG 2 cut(s) 1028, 1628
Bst2UI CCWGG 5 cut(s) 328, 883, 1644, 1855, 1898
Bst4CI ACNGT 6 cut(s) 656, 710, 948, 979, 1307, 1326
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 769, 1094
BstDEI CTNAG 5 cut(s) 177, 210, 630, 1081, 1117
BstDSI CCRYGG 2 cut(s) 1028, 1628
BstEII GGTNACC 1 cut(s) 1619
BstF5I GGATG 4 cut(s) 1245, 1732, 1798, 1820
BstFNI CGCG 1 cut(s) 620
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 5 cut(s) 30, 250, 445, 764, 1111
BstMAI GTCTC 3 cut(s) 1532, 1563, 1569
BstMBI GATC 5 cut(s) 27, 247, 442, 761, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 377, 585, 1392, 1891
BstNI CCWGG 5 cut(s) 328, 883, 1644, 1855, 1898
BstNSI RCATGY 2 cut(s) 868, 1616
BstPI GGTNACC 1 cut(s) 1619
BstSCI CCNGG 6 cut(s) 87, 326, 881, 1642, 1853, 1896
BstSFI CTRYAG 1 cut(s) 1883
BstSLI GKGCMC 1 cut(s) 1636
BstUI CGCG 1 cut(s) 620
BstV1I GCAGC 2 cut(s) 208, 1869
BstV2I GAAGAC 2 cut(s) 456, 1406
BstX2I RGATCY 1 cut(s) 761
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 1 cut(s) 761
Bsu36I CCTNAGG 1 cut(s) 177
BsuRI GGCC 6 cut(s) 290, 531, 1079, 1293, 1609, 1901
BtgI CCRYGG 2 cut(s) 1028, 1628
BtsCI GGATG 4 cut(s) 1245, 1732, 1798, 1820
BtsIMutI CAGTG 2 cut(s) 661, 944
Cac8I GCNNGC 2 cut(s) 769, 1094
CciI TCATGA 2 cut(s) 1111, 1452
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 1640, 1702
CseI GACGC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 1246, 1425, 1588
CspCI CAANNNNNGTGG 2 cut(s) 1137, 1172
CviQI GTAC 3 cut(s) 1246, 1425, 1588
DdeI CTNAG 5 cut(s) 177, 210, 630, 1081, 1117
DpnI GATC 5 cut(s) 29, 249, 444, 763, 1110
DpnII GATC 5 cut(s) 27, 247, 442, 761, 1108
DraI TTTAAA 1 cut(s) 1717
DriI GACNNNNNGTC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 1607
Eam1104I CTCTTC 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 1028, 1628
Eco147I AGGCCT 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 1532
Eco32I GATATC 1 cut(s) 1354
Eco47I GGWCC 2 cut(s) 1640, 1702
Eco57I CTGAAG 1 cut(s) 1418
Eco81I CCTNAGG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 354
Eco91I GGTNACC 1 cut(s) 1619
EcoO109I RGGNCCY 1 cut(s) 1702
EcoO65I GGTNACC 1 cut(s) 1619
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 5 cut(s) 326, 881, 1642, 1853, 1896
EcoRV GATATC 1 cut(s) 1354
EcoT14I CCWWGG 2 cut(s) 1028, 1628
ErhI CCWWGG 2 cut(s) 1028, 1628
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FaqI GGGAC 4 cut(s) 181, 300, 1676, 1715
FauI CCCGC 3 cut(s) 613, 1447, 1609
FauNDI CATATG 1 cut(s) 1742
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 197, 1883
FokI GGATG 4 cut(s) 1252, 1739, 1805, 1827
Fsp4HI GCNGC 2 cut(s) 197, 1883
FspBI CTAG 4 cut(s) 605, 768, 855, 1659
GlaI GCGC 1 cut(s) 578
GluI GCNGC 2 cut(s) 197, 1883
GsuI CTGGAG 5 cut(s) 36, 310, 1284, 1483, 1742
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 6 cut(s) 290, 531, 1079, 1293, 1609, 1901
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 579
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HindIII AAGCTT 2 cut(s) 586, 1341
HinfI GANTC 7 cut(s) 158, 304, 542, 847, 928, 1553, 1820
HpaII CCGG 1 cut(s) 89
HphI GGTGA 4 cut(s) 90, 102, 862, 1551
Hpy166II GTNNAC 1 cut(s) 870
Hpy188I TCNGA 5 cut(s) 334, 594, 818, 1105, 1280
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 5 cut(s) 674, 917, 981, 1304, 1445
HpyCH4III ACNGT 6 cut(s) 656, 710, 948, 979, 1307, 1326
HpyCH4IV ACGT 2 cut(s) 170, 1785
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 585, 1392, 1891
HpyF3I CTNAG 5 cut(s) 177, 210, 630, 1081, 1117
HpySE526I ACGT 2 cut(s) 170, 1785
HspAI GCGC 1 cut(s) 577
KpnI GGTACC 1 cut(s) 1428
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 5 cut(s) 27, 247, 442, 761, 1108
LmnI GCTCC 3 cut(s) 91, 688, 1150
Lsp1109I GCAGC 2 cut(s) 208, 1869
LweI GCATC 6 cut(s) 325, 503, 892, 1230, 1353, 1459
MaeI CTAG 4 cut(s) 605, 768, 855, 1659
MaeII ACGT 2 cut(s) 170, 1785
MaeIII GTNAC 7 cut(s) 59, 108, 305, 860, 1619, 1646, 1786
MalI GATC 5 cut(s) 29, 249, 444, 763, 1110
MboI GATC 5 cut(s) 27, 247, 442, 761, 1108
MboII GAAGA 7 cut(s) 287, 290, 452, 461, 537, 1171, 1411
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 4 cut(s) 895, 1137, 1636, 1896
MlsI TGGCCA 1 cut(s) 1609
MluNI TGGCCA 1 cut(s) 1609
MlyI GAGTC 3 cut(s) 313, 856, 1829
MmeI TCCRAC 2 cut(s) 692, 1381
Mox20I TGGCCA 1 cut(s) 1609
MscI TGGCCA 1 cut(s) 1609
MseI TTAA 4 cut(s) 777, 1047, 1314, 1716
MslI CAYNNNNRTG 2 cut(s) 654, 900
Msp20I TGGCCA 1 cut(s) 1609
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 6 cut(s) 89, 328, 883, 1644, 1855, 1898
MssI GTTTAAAC 1 cut(s) 1717
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 5 cut(s) 328, 883, 1644, 1855, 1898
MvnI CGCG 1 cut(s) 620
MwoI GCNNNNNNNGC 4 cut(s) 377, 585, 1392, 1891
NciI CCSGG 1 cut(s) 89
NcoI CCATGG 2 cut(s) 1028, 1628
NdeI CATATG 1 cut(s) 1742
NdeII GATC 5 cut(s) 27, 247, 442, 761, 1108
NheI GCTAGC 1 cut(s) 767
NlaIV GGNNCC 3 cut(s) 690, 1426, 1703
NmuCI GTSAC 3 cut(s) 108, 305, 860
NspI RCATGY 2 cut(s) 868, 1616
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 2 cut(s) 1111, 1452
PceI AGGCCT 1 cut(s) 290
PciI ACATGT 1 cut(s) 864
PctI GAATGC 1 cut(s) 564
PfeI GAWTC 4 cut(s) 158, 542, 928, 1553
PflFI GACNNNGTC 2 cut(s) 1490, 1667
PkrI GCNGC 2 cut(s) 198, 1884
PleI GAGTC 3 cut(s) 312, 855, 1828
PmeI GTTTAAAC 1 cut(s) 1717
PpsI GAGTC 3 cut(s) 312, 855, 1828
PpuMI RGGWCCY 1 cut(s) 1702
PscI ACATGT 1 cut(s) 864
Psp5II RGGWCCY 1 cut(s) 1702
Psp6I CCWGG 5 cut(s) 326, 881, 1642, 1853, 1896
PspEI GGTNACC 1 cut(s) 1619
PspGI CCWGG 5 cut(s) 326, 881, 1642, 1853, 1896
PspN4I GGNNCC 3 cut(s) 690, 1426, 1703
PspPI GGNCC 2 cut(s) 1640, 1702
PspPPI RGGWCCY 1 cut(s) 1702
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 1887
PsuI RGATCY 1 cut(s) 761
PsyI GACNNNGTC 2 cut(s) 1490, 1667
RsaI GTAC 3 cut(s) 1247, 1426, 1589
RsaNI GTAC 3 cut(s) 1246, 1425, 1588
RseI CAYNNNNRTG 2 cut(s) 654, 900
SaqAI TTAA 4 cut(s) 777, 1047, 1314, 1716
SatI GCNGC 2 cut(s) 197, 1883
Sau3AI GATC 5 cut(s) 27, 247, 442, 761, 1108
Sau96I GGNCC 2 cut(s) 1640, 1702
SchI GAGTC 3 cut(s) 313, 856, 1829
ScrFI CCNGG 6 cut(s) 89, 328, 883, 1644, 1855, 1898
SduI GDGCHC 4 cut(s) 895, 1137, 1636, 1896
SfaNI GCATC 6 cut(s) 325, 503, 892, 1230, 1353, 1459
SfcI CTRYAG 1 cut(s) 1883
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 1640, 1702
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 654, 900
SmlI CTYRAG 4 cut(s) 354, 1338, 1505, 1706
SmoI CTYRAG 4 cut(s) 354, 1338, 1505, 1706
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 3 cut(s) 620, 1440, 1616
SspI AATATT 1 cut(s) 511
SspMI CTAG 4 cut(s) 605, 768, 855, 1659
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 6 cut(s) 87, 326, 881, 1642, 1853, 1896
StyI CCWWGG 2 cut(s) 1028, 1628
TaaI ACNGT 6 cut(s) 656, 710, 948, 979, 1307, 1326
TaiI ACGT 2 cut(s) 173, 1788
TaqI TCGA 5 cut(s) 122, 355, 374, 483, 783
TfiI GAWTC 4 cut(s) 158, 542, 928, 1553
Tru1I TTAA 4 cut(s) 777, 1047, 1314, 1716
Tru9I TTAA 4 cut(s) 777, 1047, 1314, 1716
TscAI CASTG 2 cut(s) 661, 951
TseFI GTSAC 3 cut(s) 108, 305, 860
TseI GCWGC 2 cut(s) 196, 1882
Tsp45I GTSAC 3 cut(s) 108, 305, 860
TspDTI ATGAA 6 cut(s) 735, 819, 1008, 1276, 1469, 1666
TspGWI ACGGA 1 cut(s) 1805
TspRI CASTG 2 cut(s) 661, 951
Tth111I GACNNNGTC 2 cut(s) 1490, 1667
VpaK11BI GGWCC 2 cut(s) 1640, 1702
XapI RAATTY 2 cut(s) 131, 1673
XceI RCATGY 2 cut(s) 868, 1616
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 4 cut(s) 605, 768, 855, 1659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.