Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008314.1

Orthogroup ID

OG0030471

Physical Location & Seq

Genomic Coordinates Reverse (-)

36570 .. 37083

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008314.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgctcggtgtgctttcgtataatgcgattttggatgcagtgattaggtctagagggtctgttcagtttgctgaggaggtttttagtgagatgattagaaatggggtttcgcagaatgtgtatacatataacattttgattaggggtttcagcgcggcggggaatttggaaatgatcgatggcattgaagggaggttgagtgagactagtcaggttgttgacgagatgaaaagaaagggttttgttcctgatgaggtgacgaataatacactgattagtgggtattgcaagcaaggtaattttcaccaagcacttgtgttgcaagaggagatgcggaggaatggcttgtctccgaatgttgtcacttatacagcgttgatcaatgccatgtgtaaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

5.39

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030471)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233231
rosa_multiflora	Rmu_sc0008314.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	155
AciI	CCGC	3 cut(s)	155, 158, 334
AcsI	RAATTY	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	188
AhlI	ACTAGT	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	197, 354
AoxI	GGCC	1 cut(s)	396
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	268, 296
BbvCI	CCTCAGC	1 cut(s)	72
BccI	CCATC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	197, 354
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	3 cut(s)	51, 207, 400
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmsI	GCATC	2 cut(s)	25, 321
Bpu10I	CCTNAGC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
BseCI	ATCGAT	1 cut(s)	177
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	89, 341
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	197, 354
BsnI	GGCC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	174, 378
BspACI	CCGC	3 cut(s)	155, 158, 334
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	155
BssMI	GATC	2 cut(s)	174, 378
BssNAI	GTATAC	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	177, 381
BstMAI	GTCTC	2 cut(s)	197, 354
BstMBI	GATC	2 cut(s)	174, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 269
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	177
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	2 cut(s)	345, 398
CviKI_1	RGCY	2 cut(s)	345, 398
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	176, 380
DpnII	GATC	2 cut(s)	174, 378
Eco147I	AGGCCT	1 cut(s)	398
FaeI	CATG	1 cut(s)	391
FaiI	YATR	6 cut(s)	21, 123, 127, 129, 369, 389
FatI	CATG	1 cut(s)	387
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	3 cut(s)	51, 207, 400
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HphI	GGTGA	2 cut(s)	268, 296
Hpy166II	GTNNAC	2 cut(s)	123, 220
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	2 cut(s)	51, 248
Hpy8I	GTNNAC	2 cut(s)	123, 220
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	38, 288, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	174, 378
LpnPI	CCDG	2 cut(s)	197, 261
LweI	GCATC	2 cut(s)	25, 321
MaeI	CTAG	3 cut(s)	51, 207, 400
MaeIII	GTNAC	2 cut(s)	256, 361
MalI	GATC	2 cut(s)	176, 380
MboI	GATC	2 cut(s)	174, 378
MluCI	AATT	2 cut(s)	163, 298
MnlI	CCTC	7 cut(s)	47, 67, 70, 186, 247, 319, 330
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	174, 378
NlaIII	CATG	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	256, 361
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	157
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	174, 378
SetI	ASST	6 cut(s)	50, 81, 197, 216, 258, 298
SfaNI	GCATC	2 cut(s)	25, 321
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	2 cut(s)	163, 298
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	3 cut(s)	155, 158, 334
SspMI	CTAG	3 cut(s)	51, 207, 400
StuI	AGGCCT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	163, 298
TauI	GCSGC	1 cut(s)	158
TscAI	CASTG	2 cut(s)	45, 276
TseFI	GTSAC	2 cut(s)	256, 361
Tsp45I	GTSAC	2 cut(s)	256, 361
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	45, 276
XapI	RAATTY	1 cut(s)	163
XbaI	TCTAGA	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	3 cut(s)	51, 207, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.