Rmu_sc0009042.1_g000006

Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009042.1
OG0029247
Physical Location & Seq
Reverse (-)
25314 .. 26505
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009042.1_g000006.1.cds

Sequence Viewer

Length: 429 bp
atggatacaccaatctccccggagttattgaactatgttgatatttttagcccaaatgaaagtgagcttggtcgtttgacaggaatgccgaccgaaagctttgaacagattagtaatgccgttgtcaaatgccataaaatgggtgttaagcaagtcctagtaaaacttggggacaaagggtctgctctatttgtagaaggtgatgaaccaattaaacaacctgtcatatctgctgcgaaagtacttgatactaccggagccggtgatacgtttactgcctcttttgctgttgcttttgtggagggcaagtccataaaggaatgcctgagatttgcagctgcggccgcttctctttgtgttcaagtgaagggagccattcctagcatgcccgagaggaaatcagttttgaatcttcttcaatctctttga

Protein Analysis

142

Amino Acids

15.09

Weight (kDa)

5.41

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0029247)

Species Orthologous Gene IDs
pyrus_communis pycom03g19920
rosa_multiflora Rmu_sc0009042.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 139
AciI CCGC 2 cut(s) 341, 345
AcoI YGGCCR 1 cut(s) 342
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 5 cut(s) 31, 104, 362, 409, 419
AhdI GACNNNNNGTC 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 3 cut(s) 67, 99, 338
AluI AGCT 3 cut(s) 67, 99, 338
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 233, 335, 338
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 212, 275
AvaI CYCGRG 1 cut(s) 389
BbvI GCAGC 3 cut(s) 220, 325, 347
BceAI ACGGC 1 cut(s) 104
BcnI CCSGG 1 cut(s) 20
BfaI CTAG 2 cut(s) 158, 381
BisI GCNGC 5 cut(s) 234, 336, 339, 342, 345
BlsI GCNGC 5 cut(s) 235, 337, 340, 343, 346
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 20
BmeRI GACNNNNNGTC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 259, 373
BmrFI CCNGG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 317
BseX3I CGGCCG 1 cut(s) 342
BseXI GCAGC 3 cut(s) 220, 325, 347
Bsh1285I CGRYCG 2 cut(s) 93, 345
BshFI GGCC 1 cut(s) 344
BsiEI CGRYCG 2 cut(s) 93, 345
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 3 cut(s) 20, 255, 261
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 2 cut(s) 90, 326
BsnI GGCC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 389
BspACI CCGC 2 cut(s) 341, 345
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 259, 373
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 326
BstMCI CGRYCG 2 cut(s) 93, 345
BstMWI GCNNNNNNNGC 3 cut(s) 284, 341, 344
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 220, 325, 347
BstZI CGGCCG 1 cut(s) 342
BsuRI GGCC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 386
CciNI GCGGCCGC 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 260
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 385
CviJI RGCY 7 cut(s) 51, 67, 99, 260, 338, 344, 374
CviKI_1 RGCY 7 cut(s) 51, 67, 99, 260, 338, 344, 374
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 326
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 342
EagI CGGCCG 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 342
Eco52I CGGCCG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 389
FaeI CATG 1 cut(s) 388
FaiI YATR 5 cut(s) 36, 135, 227, 314, 386
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 234, 336, 339, 342, 345
Fsp4HI GCNGC 5 cut(s) 234, 336, 339, 342, 345
FspBI CTAG 2 cut(s) 158, 381
GluI GCNGC 5 cut(s) 234, 336, 339, 342, 345
HaeIII GGCC 1 cut(s) 344
HapII CCGG 3 cut(s) 20, 255, 261
Hin1II CATG 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 1 cut(s) 409
HpaII CCGG 3 cut(s) 20, 255, 261
HphI GGTGA 2 cut(s) 212, 275
Hpy166II GTNNAC 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 191, 361
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 341, 344
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 1 cut(s) 388
LmnI GCTCC 2 cut(s) 257, 371
LpnPI CCDG 6 cut(s) 33, 66, 234, 268, 274, 338
Lsp1109I GCAGC 3 cut(s) 220, 325, 347
MaeI CTAG 2 cut(s) 158, 381
MaeII ACGT 1 cut(s) 269
MboII GAAGA 2 cut(s) 404, 407
MluCI AATT 1 cut(s) 210
MnlI CCTC 3 cut(s) 289, 295, 387
MseI TTAA 2 cut(s) 147, 213
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 3 cut(s) 20, 255, 261
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 2 cut(s) 90, 326
MwoI GCNNNNNNNGC 3 cut(s) 284, 341, 344
NciI CCSGG 1 cut(s) 20
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 259, 373
NotI GCGGCCGC 1 cut(s) 342
NspI RCATGY 1 cut(s) 388
PaeI GCATGC 1 cut(s) 388
PctI GAATGC 2 cut(s) 90, 326
PfeI GAWTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 5 cut(s) 235, 337, 340, 343, 346
PspN4I GGNNCC 2 cut(s) 259, 373
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 147, 213
SatI GCNGC 5 cut(s) 234, 336, 339, 342, 345
ScaI AGTACT 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 69, 101, 202, 223, 272, 340
SphI GCATGC 1 cut(s) 388
Sse9I AATT 1 cut(s) 210
SsiI CCGC 2 cut(s) 341, 345
SspMI CTAG 2 cut(s) 158, 381
StyD4I CCNGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 272
TaqII GACCGA 1 cut(s) 107
TasI AATT 1 cut(s) 210
TatI WGTACW 1 cut(s) 241
TauI GCSGC 2 cut(s) 344, 347
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 147, 213
Tru9I TTAA 2 cut(s) 147, 213
TseI GCWGC 3 cut(s) 233, 335, 338
TspDTI ATGAA 2 cut(s) 72, 219
Van91I CCANNNNNTGG 1 cut(s) 139
XceI RCATGY 1 cut(s) 388
XspI CTAG 2 cut(s) 158, 381
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.