Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009169.1

Orthogroup ID

OG0031423

Physical Location & Seq

Genomic Coordinates Forward (+)

742 .. 1098

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtctgtgcgagtgctgaaccctaatgcggaggtgctgaacaagtcggcggccctgcacatgaacatcaacgccgccaagggcttgcaggatgtcctcaaaaccaacctcggccccaaaggcaccatcaaaatgctcgttggtggctctggagacatcaagctcactaaagatggcaacactctcctcaaagaaatgcagattcaaaaccccacagcaattatgattgccaggacagctgttgcccaagatgacattagcggagacggcaccacctctactgtcctattcattggcgagcttatgaaacaatccgaacgatacattgatgaaggtgcagttacctgtcacttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

118

Amino Acids

12.57

Weight (kDa)

6.72

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031423)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009169.1_g000001
rosa_samantha	Rh4AG154500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 269
AciI	CCGC	4 cut(s)	29, 50, 75, 261
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	163, 239, 301
AluI	AGCT	3 cut(s)	163, 239, 301
Alw26I	GTCTC	2 cut(s)	147, 258
AoxI	GGCC	2 cut(s)	51, 112
AspS9I	GGNCC	2 cut(s)	52, 113
BanI	GGYRCC	2 cut(s)	122, 269
BccI	CCATC	2 cut(s)	134, 167
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	147, 258
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	51, 75
BlsI	GCNGC	2 cut(s)	52, 76
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	52, 113
BmiI	GGNNCC	3 cut(s)	115, 124, 271
BmrFI	CCNGG	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	78, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	78, 109
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	176
BsgI	GTGCAG	2 cut(s)	41, 357
BshFI	GGCC	2 cut(s)	53, 114
BshNI	GGYRCC	2 cut(s)	122, 269
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	147, 258
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	53, 114
BspACI	CCGC	4 cut(s)	29, 50, 75, 261
BspANI	GGCC	2 cut(s)	53, 114
BspLI	GGNNCC	3 cut(s)	115, 124, 271
BspT107I	GGYRCC	2 cut(s)	122, 269
BssECI	CCNNGG	2 cut(s)	78, 109
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	86, 299
BstF5I	GGATG	1 cut(s)	97
BstMAI	GTCTC	2 cut(s)	147, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 236, 267
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	53, 114
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	86, 299
Cfr13I	GGNCC	2 cut(s)	52, 113
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	53, 84, 114, 147, 163, 239, 301
CviKI_1	RGCY	7 cut(s)	53, 84, 114, 147, 163, 239, 301
Eco130I	CCWWGG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	62, 224, 305, 355
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	51, 75
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	51, 75
GluI	GCNGC	2 cut(s)	51, 75
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	53, 114
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	58, 88, 199, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 236, 267
Hsp92II	CATG	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	68, 74, 135, 217, 244
MaeIII	GTNAC	2 cut(s)	340, 347
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	5 cut(s)	25, 107, 119, 197, 286
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	120, 236, 267
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	115, 124, 271
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	52, 76
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	115, 124, 271
PspPI	GGNCC	2 cut(s)	52, 113
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	131
SatI	GCNGC	2 cut(s)	51, 75
Sau96I	GGNCC	2 cut(s)	52, 113
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	8 cut(s)	36, 111, 165, 241, 278, 303, 337, 347
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	4 cut(s)	29, 50, 75, 261
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	283
TasI	AATT	1 cut(s)	219
TauI	GCSGC	2 cut(s)	53, 77
TfiI	GAWTC	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	77, 280, 320, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.