Rmu_sc0009208.1_g000028

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009208.1
OG0031236
Physical Location & Seq
Reverse (-)
106973 .. 107565
593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009208.1_g000028.1.cds

Sequence Viewer

Length: 492 bp
atgaagagattgtgggctaagtatcgacaatctcgagatgaagagatgtgtacgattaatactgttgtggtagcagcagtcgctgaagttgaatcttcttctcaaacacgacgaggtggttctcgattggagcgtgcaccaaatgaggagcgatttagggaatcaagagggaaaatcatgattgaagattactttgtggagcgtccagttttcagtaaagaggaatttcggacactgtacaggatgagtcacaatgttttcaaccgcatctccagtgacctttgttctatgaccgatcaatgcactgagtattgtcggatggctaaatctacctccatcgaggctcagaaacgatttacaagaggaatcgttaatctgtactcggcagaatatctccgggctcctacttcggccgaccttagaaaacttctcgccaaagctgagagaagatgttttcctgggatgattggaagcatcgactgcatacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

163

Amino Acids

18.99

Weight (kDa)

9.25

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031236)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002936.1_g000002 Rmu_sc0009208.1_g000028

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 3 cut(s) 52, 239, 380
AgsI TTSAA 3 cut(s) 92, 185, 262
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 1 cut(s) 440
AluI AGCT 1 cut(s) 440
Alw21I GWGCWC 1 cut(s) 139
Alw44I GTGCAC 1 cut(s) 135
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 1 cut(s) 411
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 224
AseI ATTAAT 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 313, 344
BciT130I CCWGG 1 cut(s) 459
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 1 cut(s) 490
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 398, 459
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 2 cut(s) 398, 459
BmsI GCATC 2 cut(s) 276, 483
BpmI CTGGAG 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse1I ACTGG 2 cut(s) 206, 273
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 3 cut(s) 249, 324, 468
BseMII CTCAG 3 cut(s) 297, 359, 432
BseNI ACTGG 2 cut(s) 206, 273
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 397
BsnI GGCC 1 cut(s) 413
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 139, 403
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 3 cut(s) 298, 358, 433
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 2 cut(s) 206, 273
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 64, 237
Bst6I CTCTTC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 5 cut(s) 18, 306, 345, 419, 441
BstF5I GGATG 3 cut(s) 249, 324, 468
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 2 cut(s) 80, 480
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 396, 457
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 86
BstZI CGGCCG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 249, 324, 468
BtsIMutI CAGTG 3 cut(s) 233, 280, 303
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 177
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 51, 238, 379
CviAII CATG 1 cut(s) 178
CviJI RGCY 6 cut(s) 17, 323, 344, 401, 413, 440
CviKI_1 RGCY 6 cut(s) 17, 323, 344, 401, 413, 440
CviQI GTAC 3 cut(s) 51, 238, 379
DdeI CTNAG 5 cut(s) 18, 306, 345, 419, 441
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 411
EagI CGGCCG 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EclXI CGGCCG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 403
Eco52I CGGCCG 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 179, 290, 485
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 256, 331, 475
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 490
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 413
HapII CCGG 1 cut(s) 397
HgaI GACGC 1 cut(s) 191
Hin1II CATG 1 cut(s) 181
HinfI GANTC 4 cut(s) 92, 161, 247, 366
HpaII CCGG 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 51, 137
Hpy188I TCNGA 3 cut(s) 231, 318, 348
Hpy188III TCNNGA 5 cut(s) 33, 35, 123, 165, 178
Hpy8I GTNNAC 2 cut(s) 51, 137
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 64, 237
HpyCH4V TGCA 3 cut(s) 137, 303, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 480
HpyF3I CTNAG 5 cut(s) 18, 306, 345, 419, 441
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 4 cut(s) 130, 148, 199, 406
LpnPI CCDG 6 cut(s) 219, 226, 286, 410, 444, 471
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 276, 483
MaeI CTAG 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 248, 275
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 6 cut(s) 16, 53, 87, 90, 197, 459
MhlI GDGCHC 2 cut(s) 139, 403
MluCI AATT 1 cut(s) 224
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 7 cut(s) 107, 139, 161, 214, 334, 343, 356
MseI TTAA 2 cut(s) 57, 372
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 2 cut(s) 398, 459
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 80, 480
NciI CCSGG 1 cut(s) 398
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 402
NmeAIII GCCGAG 1 cut(s) 362
NmuCI GTSAC 2 cut(s) 248, 275
PaeR7I CTCGAG 1 cut(s) 33
PagI TCATGA 1 cut(s) 177
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 130
PfeI GAWTC 3 cut(s) 92, 161, 366
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 52, 239, 380
RsaNI GTAC 3 cut(s) 51, 238, 379
SaqAI TTAA 2 cut(s) 57, 372
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 398, 459
SduI GDGCHC 2 cut(s) 139, 403
SetI ASST 5 cut(s) 118, 282, 335, 420, 442
SfaNI GCATC 2 cut(s) 276, 483
Sfr274I CTCGAG 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 490
StyD4I CCNGG 2 cut(s) 396, 457
TaaI ACNGT 2 cut(s) 64, 237
TaqI TCGA 5 cut(s) 25, 34, 124, 339, 477
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 224
TatI WGTACW 2 cut(s) 237, 378
TfiI GAWTC 3 cut(s) 92, 161, 366
Tru1I TTAA 2 cut(s) 57, 372
Tru9I TTAA 2 cut(s) 57, 372
TscAI CASTG 3 cut(s) 240, 280, 310
TseFI GTSAC 2 cut(s) 248, 275
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 248, 275
TspDTI ATGAA 2 cut(s) 17, 54
TspRI CASTG 3 cut(s) 240, 280, 310
VneI GTGCAC 1 cut(s) 135
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 33
XspI CTAG 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.