Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009252.1

Orthogroup ID

OG0025632

Physical Location & Seq

Genomic Coordinates Reverse (-)

4791 .. 5120

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009252.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgaatacggaggggaaatttgggtgggaggaaattgtggattcccgtcttaatgggaactttgatgtgcaagagctcaacgaagtggcagctcttgcatataaatgtgtcagccgctccccaaaaaagcggtcttccatgagagacattgtacaagtgctatcacgaatgctgaaagtgaggcacaatagaaagcaccatgcgaaatcattgtcatccacagcagaggaagttatgattgacgtgaaccaaccagaaaccaaaattcaaatggctgaacatcaaagagacgagtctatggacagcacagccgatacgtatgatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

109

Amino Acids

12.54

Weight (kDa)

6.07

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025632)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8337609.1_g000001 Rmu_sc0009252.1_g000003
rosa_samantha	Rh5BG253900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AciI	CCGC	2 cut(s)	115, 130
AcsI	RAATTY	2 cut(s)	17, 264
AfaI	GTAC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	244
AluBI	AGCT	2 cut(s)	76, 92
AluI	AGCT	2 cut(s)	76, 92
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	138, 282
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	17, 264
ArsI	GACNNNNNNTTYG	4 cut(s)	116, 148, 197, 229
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	138, 282
BisI	GCNGC	2 cut(s)	90, 115
BlsI	GCNGC	2 cut(s)	91, 116
BmgBI	CACGTC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	318
BseGI	GGATG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	138, 282
BsmBI	CGTCTC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	151
BspACI	CCGC	2 cut(s)	115, 130
BsrBI	CCGCTC	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	215
BstMAI	GTCTC	2 cut(s)	138, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSNI	TACGTA	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	139, 200
CviJI	RGCY	5 cut(s)	76, 92, 114, 275, 311
CviKI_1	RGCY	5 cut(s)	76, 92, 114, 275, 311
CviQI	GTAC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	76
Eco105I	TACGTA	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	142, 203
FaiI	YATR	8 cut(s)	100, 102, 140, 201, 236, 299, 321, 328
FatI	CATG	2 cut(s)	138, 199
Fnu4HI	GCNGC	2 cut(s)	90, 115
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	90, 115
GluI	GCNGC	2 cut(s)	90, 115
Hin1II	CATG	2 cut(s)	142, 203
HinfI	GANTC	2 cut(s)	41, 293
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	243, 317
HpyCH4V	TGCA	2 cut(s)	70, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	2 cut(s)	243, 317
Hsp92II	CATG	2 cut(s)	142, 203
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	1 cut(s)	267
Lsp1109I	GCAGC	1 cut(s)	101
MaeII	ACGT	2 cut(s)	243, 317
MbiI	CCGCTC	1 cut(s)	117
MboII	GAAGA	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	3 cut(s)	17, 33, 264
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	4, 22, 174, 220
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	142, 203
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	91, 116
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	90, 115
SchI	GAGTC	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	4 cut(s)	78, 94, 246, 320
SmiMI	CAYNNNNRTG	1 cut(s)	103
SnaBI	TACGTA	1 cut(s)	318
Sse9I	AATT	3 cut(s)	17, 33, 264
SsiI	CCGC	2 cut(s)	115, 130
SstI	GAGCTC	1 cut(s)	78
TaiI	ACGT	2 cut(s)	246, 320
TasI	AATT	3 cut(s)	17, 33, 264
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	23
XapI	RAATTY	2 cut(s)	17, 264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.