Rmu_sc0009291.1_g000013

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009291.1
OG0031427
Physical Location & Seq
Forward (+)
62282 .. 65833
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009291.1_g000013.1.cds

Sequence Viewer

Length: 1095 bp
atggatagacttagcaactttccagatgagttagtagacaaaattttatgtattttgccaattcagcaggctgtgaagacatgtgttttatcaagcacatggcggtatacatcaaataggctttcacaacttgtgttcgattggaagcataacgggaattggagcaacccagagtttgtcgaaatggttgatcatgtactctcaaatcatgttgggcccatatacaggtttaaaatagagcgtcttgagtttctagacccaagtgacattgatcgatggatttttcatgtatcaagaaactctgtcaaagagttcatacttgatagcttccaaagggaaccctacaagatccctgaatgtttgtattcctgccaagatattacatctctcactttatgtggttgcttactagatccacctcctacattcagaggattcgtgagcttgaagagaattgaattttatgacgtttccctggcccaagatgtatttgacaatatgcttggttactgtcctttgcttgaagtgttgattttgcaatgctgtgatggtttcaccaatttccgtattaatgcaccaaaactccaatatcttaactttgaaggttcttttgatgatgttactctcaagaacacttcaaaccttactgatattaccatttctatgtgtgaacgaagttttgctggtggtggttctagtaatttggtcaagtttttcagtgacctgcctcgaattcaaaggctcacaattaagaattactttttaaaggcatcttttgtacttgggaaagaatgcaaggacctcacagagggggtgaagaaggctacattcaagggatataacaccattgcggaaactgtggatgttattaagaaaccgcaacgccatgaccctacgataagcctaccagcttggccatatgatgttcccttagaagccagaatgttaatgtttggagaaggatcgggatcttctacccgacacacaaatgctgatcatttgaaagcaacaattgacttgaatggtcataaagtgatagttgaacgaaatgttgatgcaatttctaatctcatgtctaatctatttttgaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

364

Amino Acids

41.63

Weight (kDa)

6.09

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031427)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0009291.1_g000013
rosa_rugosa Rorug01G0105800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccI GTMKAC 2 cut(s) 36, 107
AciI CCGC 3 cut(s) 103, 851, 878
AclWI GGATC 4 cut(s) 343, 407, 970, 976
AcoI YGGCCR 1 cut(s) 914
AcsI RAATTY 3 cut(s) 42, 458, 732
AfaI GTAC 2 cut(s) 198, 780
AfiI CCNNNNNNNGG 2 cut(s) 225, 808
AflIII ACRYGT 1 cut(s) 80
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 3 cut(s) 327, 444, 911
AluI AGCT 3 cut(s) 327, 444, 911
AlwI GGATC 4 cut(s) 343, 407, 970, 976
AoxI GGCC 3 cut(s) 215, 477, 914
ApaI GGGCCC 1 cut(s) 219
ApoI RAATTY 3 cut(s) 42, 458, 732
AseI ATTAAT 1 cut(s) 570
AspS9I GGNCC 4 cut(s) 215, 216, 478, 799
AsuHPI GGTGA 2 cut(s) 547, 826
AvaII GGWCC 1 cut(s) 799
BaeGI GKGCMC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 916
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 83
BccI CCATC 2 cut(s) 270, 542
BciT130I CCWGG 1 cut(s) 476
BclI TGATCA 2 cut(s) 190, 994
BfaI CTAG 3 cut(s) 254, 410, 696
BfuAI ACCTGC 1 cut(s) 732
Bme1390I CCNGG 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 799
BmgT120I GGNCC 4 cut(s) 215, 216, 478, 799
BmiI GGNNCC 2 cut(s) 217, 339
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 779, 1045
BpiI GAAGAC 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 266, 611
Bsa29I ATCGAT 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 967
BsaJI CCNNGG 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 808
Bse3DI GCAATG 2 cut(s) 545, 846
Bse8I GATNNNNATC 1 cut(s) 967
BseBI CCWGG 1 cut(s) 476
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 868
BseJI GATNNNNATC 1 cut(s) 967
BseLI CCNNNNNNNGG 2 cut(s) 225, 808
BseMI GCAATG 2 cut(s) 545, 846
BseSI GKGCMC 1 cut(s) 219
BshFI GGCC 3 cut(s) 217, 479, 916
BshVI ATCGAT 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 225, 808
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 3 cut(s) 217, 479, 916
Bsp120I GGGCCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
BspACI CCGC 3 cut(s) 103, 851, 878
BspANI GGCC 3 cut(s) 217, 479, 916
BspDI ATCGAT 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 217, 339
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 4 cut(s) 343, 407, 970, 976
BsrDI GCAATG 2 cut(s) 545, 846
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
BssNAI GTATAC 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 512, 859
Bst6I CTCTTC 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 11, 931
BstENI CCTNNNNNAGG 1 cut(s) 806
BstF5I GGATG 1 cut(s) 868
BstKTI GATC 7 cut(s) 193, 274, 351, 415, 965, 971, 997
BstMBI GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 3 cut(s) 348, 412, 968
BstYI RGATCY 3 cut(s) 348, 412, 968
BstZ17I GTATAC 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 274
BsuRI GGCC 3 cut(s) 217, 479, 916
BsuTUI ATCGAT 1 cut(s) 274
BtsCI GGATG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 724
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 4 cut(s) 215, 216, 478, 799
ClaI ATCGAT 1 cut(s) 274
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 197, 779
CviAII CATG 7 cut(s) 81, 99, 194, 209, 287, 887, 1072
CviQI GTAC 2 cut(s) 197, 779
DdeI CTNAG 2 cut(s) 11, 931
DpnI GATC 7 cut(s) 192, 273, 350, 414, 964, 970, 996
DpnII GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
DraI TTTAAA 2 cut(s) 232, 765
EaeI YGGCCR 1 cut(s) 914
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 799
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 799
EcoRI GAATTC 1 cut(s) 732
EcoRII CCWGG 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 7 cut(s) 84, 102, 197, 212, 290, 890, 1075
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FatI CATG 7 cut(s) 80, 98, 193, 208, 286, 886, 1071
FauNDI CATATG 1 cut(s) 919
FbaI TGATCA 2 cut(s) 190, 994
FblI GTMKAC 2 cut(s) 36, 107
FokI GGATG 1 cut(s) 875
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 3 cut(s) 254, 410, 696
HaeIII GGCC 3 cut(s) 217, 479, 916
HgaI GACGC 1 cut(s) 230
Hin1II CATG 7 cut(s) 84, 102, 197, 212, 290, 890, 1075
HinfI GANTC 1 cut(s) 435
HphI GGTGA 2 cut(s) 547, 826
Hpy166II GTNNAC 3 cut(s) 37, 108, 671
Hpy188I TCNGA 1 cut(s) 431
Hpy188III TCNNGA 7 cut(s) 23, 245, 254, 294, 439, 628, 966
Hpy8I GTNNAC 3 cut(s) 37, 108, 671
HpyAV CCTTC 3 cut(s) 596, 814, 953
HpyCH4III ACNGT 2 cut(s) 512, 859
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 4 cut(s) 538, 575, 795, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 11, 931
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 7 cut(s) 84, 102, 197, 212, 290, 890, 1075
Ksp22I TGATCA 2 cut(s) 190, 994
Kzo9I GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
LmnI GCTCC 1 cut(s) 162
LweI GCATC 2 cut(s) 779, 1045
MaeI CTAG 3 cut(s) 254, 410, 696
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 4 cut(s) 263, 506, 619, 719
MalI GATC 7 cut(s) 192, 273, 350, 414, 964, 970, 996
MboI GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
MboII GAAGA 4 cut(s) 88, 460, 829, 963
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 3 cut(s) 348, 412, 968
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 916
MluNI TGGCCA 1 cut(s) 916
MnlI CCTC 5 cut(s) 425, 429, 738, 802, 812
Mox20I TGGCCA 1 cut(s) 916
MscI TGGCCA 1 cut(s) 916
MseI TTAA 7 cut(s) 231, 570, 594, 750, 764, 870, 947
MslI CAYNNNNRTG 2 cut(s) 662, 987
Msp20I TGGCCA 1 cut(s) 916
MspR9I CCNGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 1 cut(s) 797
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeI CATATG 1 cut(s) 919
NdeII GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
NlaIII CATG 7 cut(s) 84, 102, 197, 212, 290, 890, 1075
NlaIV GGNNCC 2 cut(s) 217, 339
NmuCI GTSAC 2 cut(s) 263, 719
NspI RCATGY 1 cut(s) 84
PciI ACATGT 1 cut(s) 80
PctI GAATGC 1 cut(s) 797
PfeI GAWTC 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 799
PscI ACATGT 1 cut(s) 80
PshBI ATTAAT 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 217, 339
PspOMI GGGCCC 1 cut(s) 215
PspPI GGNCC 4 cut(s) 215, 216, 478, 799
PspPPI RGGWCCY 1 cut(s) 799
PsuI RGATCY 3 cut(s) 348, 412, 968
RsaI GTAC 2 cut(s) 198, 780
RsaNI GTAC 2 cut(s) 197, 779
RseI CAYNNNNRTG 2 cut(s) 662, 987
SaqAI TTAA 7 cut(s) 231, 570, 594, 750, 764, 870, 947
Sau3AI GATC 7 cut(s) 190, 271, 348, 412, 962, 968, 994
Sau96I GGNCC 4 cut(s) 215, 216, 478, 799
ScrFI CCNGG 1 cut(s) 476
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 2 cut(s) 779, 1045
SinI GGWCC 1 cut(s) 799
SmiMI CAYNNNNRTG 2 cut(s) 662, 987
SmlI CTYRAG 2 cut(s) 245, 626
SmoI CTYRAG 2 cut(s) 245, 626
SsiI CCGC 3 cut(s) 103, 851, 878
SspMI CTAG 3 cut(s) 254, 410, 696
StyD4I CCNGG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 512, 859
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 138, 180, 274, 730
TatI WGTACW 2 cut(s) 196, 778
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 7 cut(s) 231, 570, 594, 750, 764, 870, 947
Tru9I TTAA 7 cut(s) 231, 570, 594, 750, 764, 870, 947
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 2 cut(s) 263, 719
Tsp45I GTSAC 2 cut(s) 263, 719
TspDTI ATGAA 2 cut(s) 275, 304
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 799
VspI ATTAAT 1 cut(s) 570
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 3 cut(s) 42, 458, 732
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 1 cut(s) 84
XmiI GTMKAC 2 cut(s) 36, 107
XspI CTAG 3 cut(s) 254, 410, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.