Neprosin
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004757.1_g000019 Rmu_sc0009946.1_g000007 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 639 |
| AccB1I | GGYRCC | 3 cut(s) | 72, 89, 655 |
| AccBSI | CCGCTC | 1 cut(s) | 645 |
| AccI | GTMKAC | 1 cut(s) | 802 |
| AccII | CGCG | 2 cut(s) | 497, 1643 |
| AciI | CCGC | 8 cut(s) | 301, 645, 741, 969, 1157, 1478, 1568, 1641 |
| AclI | AACGTT | 1 cut(s) | 1335 |
| AclWI | GGATC | 3 cut(s) | 597, 686, 699 |
| AcoI | YGGCCR | 3 cut(s) | 309, 1390, 1561 |
| AcsI | RAATTY | 1 cut(s) | 1703 |
| AfaI | GTAC | 6 cut(s) | 550, 664, 779, 1221, 1367, 1504 |
| AfeI | AGCGCT | 1 cut(s) | 394 |
| AgeI | ACCGGT | 2 cut(s) | 1583, 1604 |
| AgsI | TTSAA | 6 cut(s) | 336, 390, 913, 1240, 1324, 1511 |
| AjnI | CCWGG | 2 cut(s) | 150, 348 |
| AluBI | AGCT | 6 cut(s) | 41, 212, 364, 1150, 1376, 1514 |
| AluI | AGCT | 6 cut(s) | 41, 212, 364, 1150, 1376, 1514 |
| Alw21I | GWGCWC | 3 cut(s) | 413, 1408, 1549 |
| Alw26I | GTCTC | 2 cut(s) | 300, 1578 |
| AlwI | GGATC | 3 cut(s) | 597, 686, 699 |
| Aor51HI | AGCGCT | 1 cut(s) | 394 |
| AoxI | GGCC | 5 cut(s) | 248, 309, 1015, 1390, 1561 |
| ApeKI | GCWGC | 4 cut(s) | 196, 520, 770, 1105 |
| ApoI | RAATTY | 1 cut(s) | 1703 |
| AsiGI | ACCGGT | 2 cut(s) | 1583, 1604 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1528 |
| AspA2I | CCTAGG | 1 cut(s) | 200 |
| AspLEI | GCGC | 1 cut(s) | 395 |
| AspS9I | GGNCC | 5 cut(s) | 59, 148, 220, 1015, 1602 |
| AsuII | TTCGAA | 1 cut(s) | 1276 |
| AvaII | GGWCC | 4 cut(s) | 59, 148, 220, 1602 |
| AvrII | CCTAGG | 1 cut(s) | 200 |
| BaeGI | GKGCMC | 2 cut(s) | 75, 1253 |
| BalI | TGGCCA | 2 cut(s) | 311, 1392 |
| BamHI | GGATCC | 1 cut(s) | 691 |
| BanI | GGYRCC | 3 cut(s) | 72, 89, 655 |
| BanII | GRGCYC | 3 cut(s) | 851, 1027, 1433 |
| Bbv12I | GWGCWC | 3 cut(s) | 413, 1408, 1549 |
| BbvI | GCAGC | 4 cut(s) | 208, 532, 782, 1117 |
| BccI | CCATC | 9 cut(s) | 135, 223, 301, 319, 554, 807, 857, 899, 941 |
| BceAI | ACGGC | 2 cut(s) | 643, 1355 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 400, 434 |
| BciT130I | CCWGG | 2 cut(s) | 152, 350 |
| BciVI | GTATCC | 2 cut(s) | 965, 1179 |
| BclI | TGATCA | 1 cut(s) | 1554 |
| BcoDI | GTCTC | 2 cut(s) | 300, 1578 |
| BfaI | CTAG | 6 cut(s) | 138, 201, 225, 996, 1311, 1377 |
| BfmI | CTRYAG | 1 cut(s) | 630 |
| BfoI | RGCGCY | 1 cut(s) | 396 |
| BfuAI | ACCTGC | 1 cut(s) | 639 |
| BfuI | GTATCC | 2 cut(s) | 965, 1179 |
| BisI | GCNGC | 5 cut(s) | 197, 521, 646, 771, 1106 |
| BlnI | CCTAGG | 1 cut(s) | 200 |
| BlsI | GCNGC | 5 cut(s) | 198, 522, 647, 772, 1107 |
| BmcAI | AGTACT | 2 cut(s) | 1221, 1504 |
| Bme1390I | CCNGG | 2 cut(s) | 152, 350 |
| Bme18I | GGWCC | 4 cut(s) | 59, 148, 220, 1602 |
| BmgT120I | GGNCC | 5 cut(s) | 59, 148, 220, 1015, 1602 |
| BmiI | GGNNCC | 9 cut(s) | 60, 74, 91, 222, 657, 693, 850, 1430, 1603 |
| BmrFI | CCNGG | 2 cut(s) | 152, 350 |
| BmrI | ACTGGG | 1 cut(s) | 1059 |
| BmsI | GCATC | 5 cut(s) | 162, 183, 859, 1361, 1421 |
| BmuI | ACTGGG | 1 cut(s) | 1059 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1570 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 494, 526, 496, 528 |
| BpmI | CTGGAG | 1 cut(s) | 1536 |
| Bpu14I | TTCGAA | 1 cut(s) | 1276 |
| BsaAI | YACGTR | 2 cut(s) | 548, 777 |
| BsaI | GGTCTC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 3 cut(s) | 62, 200, 824 |
| BsaWI | WCCGGW | 6 cut(s) | 1549, 1583, 1590, 1604, 1653, 1693 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 833, 863, 974, 1004 |
| Bse118I | RCCGGY | 3 cut(s) | 86, 1583, 1604 |
| Bse1I | ACTGG | 5 cut(s) | 113, 693, 1054, 1684, 1691 |
| Bse3DI | GCAATG | 1 cut(s) | 515 |
| BseBI | CCWGG | 2 cut(s) | 152, 350 |
| BseDI | CCNNGG | 3 cut(s) | 62, 200, 824 |
| BseGI | GGATG | 6 cut(s) | 177, 406, 818, 868, 1059, 1120 |
| BseMI | GCAATG | 1 cut(s) | 515 |
| BseMII | CTCAG | 1 cut(s) | 1295 |
| BseNI | ACTGG | 5 cut(s) | 113, 693, 1054, 1684, 1691 |
| BseRI | GAGGAG | 3 cut(s) | 419, 782, 1463 |
| BseSI | GKGCMC | 2 cut(s) | 75, 1253 |
| BseXI | GCAGC | 4 cut(s) | 208, 532, 782, 1117 |
| BsgI | GTGCAG | 1 cut(s) | 789 |
| Bsh1236I | CGCG | 2 cut(s) | 497, 1643 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1568, 1647 |
| BshFI | GGCC | 5 cut(s) | 250, 311, 1017, 1392, 1563 |
| BshNI | GGYRCC | 3 cut(s) | 72, 89, 655 |
| BshTI | ACCGGT | 2 cut(s) | 1583, 1604 |
| BsiEI | CGRYCG | 2 cut(s) | 1568, 1647 |
| BsiHKAI | GWGCWC | 3 cut(s) | 413, 1408, 1549 |
| BslFI | GGGAC | 3 cut(s) | 72, 1615, 1697 |
| BsmAI | GTCTC | 2 cut(s) | 300, 1578 |
| BsmFI | GGGAC | 3 cut(s) | 72, 1615, 1697 |
| BsnI | GGCC | 5 cut(s) | 250, 311, 1017, 1392, 1563 |
| Bso31I | GGTCTC | 1 cut(s) | 300 |
| Bsp119I | TTCGAA | 1 cut(s) | 1276 |
| Bsp1286I | GDGCHC | 8 cut(s) | 75, 413, 851, 1027, 1253, 1408, 1433, 1549 |
| Bsp143I | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| BspACI | CCGC | 8 cut(s) | 301, 645, 741, 969, 1157, 1478, 1568, 1641 |
| BspANI | GGCC | 5 cut(s) | 250, 311, 1017, 1392, 1563 |
| BspCNI | CTCAG | 1 cut(s) | 1294 |
| BspFNI | CGCG | 2 cut(s) | 497, 1643 |
| BspHI | TCATGA | 3 cut(s) | 321, 1360, 1486 |
| BspLI | GGNNCC | 9 cut(s) | 60, 74, 91, 222, 657, 693, 850, 1430, 1603 |
| BspMI | ACCTGC | 1 cut(s) | 639 |
| BspPI | GGATC | 3 cut(s) | 597, 686, 699 |
| BspT104I | TTCGAA | 1 cut(s) | 1276 |
| BspT107I | GGYRCC | 3 cut(s) | 72, 89, 655 |
| BspTNI | GGTCTC | 1 cut(s) | 300 |
| BsrBI | CCGCTC | 1 cut(s) | 645 |
| BsrDI | GCAATG | 1 cut(s) | 515 |
| BsrFI | RCCGGY | 3 cut(s) | 86, 1583, 1604 |
| BsrI | ACTGG | 5 cut(s) | 113, 693, 1054, 1684, 1691 |
| BssAI | RCCGGY | 3 cut(s) | 86, 1583, 1604 |
| BssECI | CCNNGG | 3 cut(s) | 62, 200, 824 |
| BssMI | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| BssT1I | CCWWGG | 3 cut(s) | 62, 200, 824 |
| Bst2UI | CCWGG | 2 cut(s) | 152, 350 |
| Bst4CI | ACNGT | 2 cut(s) | 569, 1507 |
| Bst6I | CTCTTC | 2 cut(s) | 497, 1239 |
| BstBAI | YACGTR | 2 cut(s) | 548, 777 |
| BstBI | TTCGAA | 1 cut(s) | 1276 |
| BstC8I | GCNNGC | 2 cut(s) | 1110, 1350 |
| BstDEI | CTNAG | 4 cut(s) | 96, 858, 1115, 1281 |
| BstEII | GGTNACC | 2 cut(s) | 1586, 1649 |
| BstF5I | GGATG | 6 cut(s) | 177, 406, 818, 868, 1059, 1120 |
| BstFNI | CGCG | 2 cut(s) | 497, 1643 |
| BstH2I | RGCGCY | 1 cut(s) | 396 |
| BstHHI | GCGC | 1 cut(s) | 395 |
| BstKTI | GATC | 7 cut(s) | 164, 490, 592, 618, 694, 1557, 1647 |
| BstMAI | GTCTC | 2 cut(s) | 300, 1578 |
| BstMBI | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| BstMCI | CGRYCG | 2 cut(s) | 1568, 1647 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 891, 1156 |
| BstNI | CCWGG | 2 cut(s) | 152, 350 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1570 |
| BstPI | GGTNACC | 2 cut(s) | 1586, 1649 |
| BstSCI | CCNGG | 2 cut(s) | 150, 348 |
| BstSFI | CTRYAG | 1 cut(s) | 630 |
| BstSLI | GKGCMC | 2 cut(s) | 75, 1253 |
| BstUI | CGCG | 2 cut(s) | 497, 1643 |
| BstV1I | GCAGC | 4 cut(s) | 208, 532, 782, 1117 |
| BstX2I | RGATCY | 2 cut(s) | 589, 691 |
| BstYI | RGATCY | 2 cut(s) | 589, 691 |
| BsuI | GTATCC | 2 cut(s) | 965, 1179 |
| BsuRI | GGCC | 5 cut(s) | 250, 311, 1017, 1392, 1563 |
| BtgZI | GCGATG | 3 cut(s) | 573, 960, 1080 |
| BtsCI | GGATG | 6 cut(s) | 177, 406, 818, 868, 1059, 1120 |
| BtsI | GCAGTG | 1 cut(s) | 732 |
| BtsIMutI | CAGTG | 2 cut(s) | 732, 1564 |
| BveI | ACCTGC | 1 cut(s) | 639 |
| Cac8I | GCNNGC | 2 cut(s) | 1110, 1350 |
| CciI | TCATGA | 3 cut(s) | 321, 1360, 1486 |
| CfoI | GCGC | 1 cut(s) | 395 |
| Cfr10I | RCCGGY | 3 cut(s) | 86, 1583, 1604 |
| Cfr13I | GGNCC | 5 cut(s) | 59, 148, 220, 1015, 1602 |
| CsiI | ACCWGGT | 1 cut(s) | 150 |
| Csp6I | GTAC | 6 cut(s) | 549, 663, 778, 1220, 1366, 1503 |
| CspAI | ACCGGT | 2 cut(s) | 1583, 1604 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 378, 413 |
| CviAII | CATG | 7 cut(s) | 50, 322, 671, 878, 1028, 1361, 1487 |
| CviQI | GTAC | 6 cut(s) | 549, 663, 778, 1220, 1366, 1503 |
| DdeI | CTNAG | 4 cut(s) | 96, 858, 1115, 1281 |
| DpnI | GATC | 7 cut(s) | 163, 489, 591, 617, 693, 1556, 1646 |
| DpnII | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| EaeI | YGGCCR | 3 cut(s) | 309, 1390, 1561 |
| Eam1104I | CTCTTC | 2 cut(s) | 497, 1239 |
| EarI | CTCTTC | 2 cut(s) | 497, 1239 |
| EciI | GGCGGA | 1 cut(s) | 1146 |
| Eco130I | CCWWGG | 3 cut(s) | 62, 200, 824 |
| Eco24I | GRGCYC | 3 cut(s) | 851, 1027, 1433 |
| Eco31I | GGTCTC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 4 cut(s) | 59, 148, 220, 1602 |
| Eco47III | AGCGCT | 1 cut(s) | 394 |
| Eco91I | GGTNACC | 2 cut(s) | 1586, 1649 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| EcoO65I | GGTNACC | 2 cut(s) | 1586, 1649 |
| EcoRII | CCWGG | 2 cut(s) | 150, 348 |
| EcoT14I | CCWWGG | 3 cut(s) | 62, 200, 824 |
| EcoT38I | GRGCYC | 3 cut(s) | 851, 1027, 1433 |
| ErhI | CCWWGG | 3 cut(s) | 62, 200, 824 |
| FaeI | CATG | 7 cut(s) | 53, 325, 674, 881, 1031, 1364, 1490 |
| FaqI | GGGAC | 3 cut(s) | 72, 1615, 1697 |
| FatI | CATG | 7 cut(s) | 49, 321, 670, 877, 1027, 1360, 1486 |
| FauI | CCCGC | 2 cut(s) | 1471, 1648 |
| FbaI | TGATCA | 1 cut(s) | 1554 |
| FblI | GTMKAC | 1 cut(s) | 802 |
| Fnu4HI | GCNGC | 5 cut(s) | 197, 521, 646, 771, 1106 |
| FokI | GGATG | 6 cut(s) | 184, 413, 825, 875, 1066, 1107 |
| FriOI | GRGCYC | 3 cut(s) | 851, 1027, 1433 |
| Fsp4HI | GCNGC | 5 cut(s) | 197, 521, 646, 771, 1106 |
| FspBI | CTAG | 6 cut(s) | 138, 201, 225, 996, 1311, 1377 |
| GlaI | GCGC | 1 cut(s) | 394 |
| GluI | GCNGC | 5 cut(s) | 197, 521, 646, 771, 1106 |
| GsuI | CTGGAG | 1 cut(s) | 1536 |
| HaeII | RGCGCY | 1 cut(s) | 396 |
| HaeIII | GGCC | 5 cut(s) | 250, 311, 1017, 1392, 1563 |
| HhaI | GCGC | 1 cut(s) | 395 |
| Hin1II | CATG | 7 cut(s) | 53, 325, 674, 881, 1031, 1364, 1490 |
| Hin6I | GCGC | 1 cut(s) | 393 |
| HinP1I | GCGC | 1 cut(s) | 393 |
| HincII | GTYRAC | 1 cut(s) | 803 |
| HindII | GTYRAC | 1 cut(s) | 803 |
| Hpy166II | GTNNAC | 5 cut(s) | 663, 803, 1178, 1344, 1420 |
| Hpy188I | TCNGA | 7 cut(s) | 220, 448, 681, 712, 1006, 1677, 1702 |
| Hpy188III | TCNNGA | 8 cut(s) | 165, 322, 340, 1045, 1205, 1361, 1487, 1661 |
| Hpy8I | GTNNAC | 5 cut(s) | 663, 803, 1178, 1344, 1420 |
| HpyAV | CCTTC | 4 cut(s) | 724, 907, 1064, 1250 |
| HpyCH4III | ACNGT | 2 cut(s) | 569, 1507 |
| HpyCH4IV | ACGT | 5 cut(s) | 547, 776, 975, 1335, 1422 |
| HpyCH4V | TGCA | 6 cut(s) | 196, 520, 725, 770, 1089, 1352 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 891, 1156 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 858, 1115, 1281 |
| HpySE526I | ACGT | 5 cut(s) | 547, 776, 975, 1335, 1422 |
| Hsp92II | CATG | 7 cut(s) | 53, 325, 674, 881, 1031, 1364, 1490 |
| HspAI | GCGC | 1 cut(s) | 393 |
| Ksp22I | TGATCA | 1 cut(s) | 1554 |
| Kzo9I | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| LmnI | GCTCC | 7 cut(s) | 217, 642, 854, 982, 1403, 1428, 1552 |
| Lsp1109I | GCAGC | 4 cut(s) | 208, 532, 782, 1117 |
| LweI | GCATC | 5 cut(s) | 162, 183, 859, 1361, 1421 |
| MabI | ACCWGGT | 1 cut(s) | 150 |
| MaeI | CTAG | 6 cut(s) | 138, 201, 225, 996, 1311, 1377 |
| MaeII | ACGT | 5 cut(s) | 547, 776, 975, 1335, 1422 |
| MaeIII | GTNAC | 5 cut(s) | 115, 1586, 1607, 1649, 1682 |
| MalI | GATC | 7 cut(s) | 163, 489, 591, 617, 693, 1556, 1646 |
| MbiI | CCGCTC | 1 cut(s) | 645 |
| MboI | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| MflI | RGATCY | 2 cut(s) | 589, 691 |
| MhlI | GDGCHC | 8 cut(s) | 75, 413, 851, 1027, 1253, 1408, 1433, 1549 |
| MlsI | TGGCCA | 2 cut(s) | 311, 1392 |
| MluCI | AATT | 3 cut(s) | 315, 1057, 1703 |
| MluNI | TGGCCA | 2 cut(s) | 311, 1392 |
| MlyI | GAGTC | 1 cut(s) | 828 |
| MmeI | TCCRAC | 3 cut(s) | 126, 206, 719 |
| Mox20I | TGGCCA | 2 cut(s) | 311, 1392 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1528 |
| MscI | TGGCCA | 2 cut(s) | 311, 1392 |
| MseI | TTAA | 3 cut(s) | 1040, 1182, 1290 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1206 |
| Msp20I | TGGCCA | 2 cut(s) | 311, 1392 |
| MspA1I | CMGCKG | 2 cut(s) | 1150, 1570 |
| MspR9I | CCNGG | 2 cut(s) | 152, 350 |
| MvaI | CCWGG | 2 cut(s) | 152, 350 |
| MvnI | CGCG | 2 cut(s) | 497, 1643 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 891, 1156 |
| NdeII | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| NlaIII | CATG | 7 cut(s) | 53, 325, 674, 881, 1031, 1364, 1490 |
| NlaIV | GGNNCC | 9 cut(s) | 60, 74, 91, 222, 657, 693, 850, 1430, 1603 |
| NmuCI | GTSAC | 4 cut(s) | 1586, 1607, 1649, 1682 |
| NspV | TTCGAA | 1 cut(s) | 1276 |
| PagI | TCATGA | 3 cut(s) | 321, 1360, 1486 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1528 |
| PfeI | GAWTC | 9 cut(s) | 288, 527, 667, 1153, 1615, 1636, 1657, 1664, 1690 |
| PinAI | ACCGGT | 2 cut(s) | 1583, 1604 |
| PkrI | GCNGC | 5 cut(s) | 198, 522, 647, 772, 1107 |
| Ple19I | CGATCG | 1 cut(s) | 1647 |
| PleI | GAGTC | 1 cut(s) | 828 |
| PpsI | GAGTC | 1 cut(s) | 828 |
| Ppu21I | YACGTR | 2 cut(s) | 548, 777 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1570 |
| Psp1406I | AACGTT | 1 cut(s) | 1335 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| Psp6I | CCWGG | 2 cut(s) | 150, 348 |
| PspEI | GGTNACC | 2 cut(s) | 1586, 1649 |
| PspGI | CCWGG | 2 cut(s) | 150, 348 |
| PspN4I | GGNNCC | 9 cut(s) | 60, 74, 91, 222, 657, 693, 850, 1430, 1603 |
| PspPI | GGNCC | 5 cut(s) | 59, 148, 220, 1015, 1602 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| PsuI | RGATCY | 2 cut(s) | 589, 691 |
| PvuI | CGATCG | 1 cut(s) | 1647 |
| PvuII | CAGCTG | 1 cut(s) | 1150 |
| RsaI | GTAC | 6 cut(s) | 550, 664, 779, 1221, 1367, 1504 |
| RsaNI | GTAC | 6 cut(s) | 549, 663, 778, 1220, 1366, 1503 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1206 |
| SalI | GTCGAC | 1 cut(s) | 801 |
| SaqAI | TTAA | 3 cut(s) | 1040, 1182, 1290 |
| SatI | GCNGC | 5 cut(s) | 197, 521, 646, 771, 1106 |
| Sau3AI | GATC | 7 cut(s) | 161, 487, 589, 615, 691, 1554, 1644 |
| Sau96I | GGNCC | 5 cut(s) | 59, 148, 220, 1015, 1602 |
| ScaI | AGTACT | 2 cut(s) | 1221, 1504 |
| SchI | GAGTC | 1 cut(s) | 828 |
| ScrFI | CCNGG | 2 cut(s) | 152, 350 |
| SduI | GDGCHC | 8 cut(s) | 75, 413, 851, 1027, 1253, 1408, 1433, 1549 |
| SexAI | ACCWGGT | 1 cut(s) | 150 |
| SfaNI | GCATC | 5 cut(s) | 162, 183, 859, 1361, 1421 |
| SfcI | CTRYAG | 1 cut(s) | 630 |
| SfuI | TTCGAA | 1 cut(s) | 1276 |
| SinI | GGWCC | 4 cut(s) | 59, 148, 220, 1602 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1206 |
| Sse9I | AATT | 3 cut(s) | 315, 1057, 1703 |
| SsiI | CCGC | 8 cut(s) | 301, 645, 741, 969, 1157, 1478, 1568, 1641 |
| SspI | AATATT | 1 cut(s) | 1397 |
| SspMI | CTAG | 6 cut(s) | 138, 201, 225, 996, 1311, 1377 |
| StyD4I | CCNGG | 2 cut(s) | 150, 348 |
| StyI | CCWWGG | 3 cut(s) | 62, 200, 824 |
| TaaI | ACNGT | 2 cut(s) | 569, 1507 |
| TaiI | ACGT | 5 cut(s) | 550, 779, 978, 1338, 1425 |
| TaqI | TCGA | 2 cut(s) | 802, 1276 |
| TaqII | GACCGA | 1 cut(s) | 1637 |
| TasI | AATT | 3 cut(s) | 315, 1057, 1703 |
| TatI | WGTACW | 2 cut(s) | 1219, 1502 |
| TauI | GCSGC | 1 cut(s) | 648 |
| TfiI | GAWTC | 9 cut(s) | 288, 527, 667, 1153, 1615, 1636, 1657, 1664, 1690 |
| Tru1I | TTAA | 3 cut(s) | 1040, 1182, 1290 |
| Tru9I | TTAA | 3 cut(s) | 1040, 1182, 1290 |
| TscAI | CASTG | 2 cut(s) | 732, 1564 |
| TseFI | GTSAC | 4 cut(s) | 1586, 1607, 1649, 1682 |
| TseI | GCWGC | 4 cut(s) | 196, 520, 770, 1105 |
| Tsp45I | GTSAC | 4 cut(s) | 1586, 1607, 1649, 1682 |
| TspDTI | ATGAA | 8 cut(s) | 245, 659, 748, 1070, 1083, 1200, 1257, 1503 |
| TspGWI | ACGGA | 4 cut(s) | 10, 482, 1155, 1416 |
| TspRI | CASTG | 2 cut(s) | 732, 1564 |
| VpaK11BI | GGWCC | 4 cut(s) | 59, 148, 220, 1602 |
| XapI | RAATTY | 1 cut(s) | 1703 |
| XmaJI | CCTAGG | 1 cut(s) | 200 |
| XmiI | GTMKAC | 1 cut(s) | 802 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1528 |
| XspI | CTAG | 6 cut(s) | 138, 201, 225, 996, 1311, 1377 |
| ZrmI | AGTACT | 2 cut(s) | 1221, 1504 |