Rmu_sc0009958.1_g000008

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009958.1
OG0031197
Physical Location & Seq
Forward (+)
24919 .. 25809
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009958.1_g000008.1.cds

Sequence Viewer

Length: 480 bp
atgagtattttggttaggcctgagcgtctgaaacgctatttgaagcaagttggtgattgcagcatcacctggggcgtcatcaccataatggacgctatccatggtgtcatggttagggactgtgccagccccaagctggtggtggatggaggcagtgccctaggaattgaagatggctttgtggcaccatattattatgcatattggtggaccagtgagtggcgtttgcaggatattttgacaactgataaatcccgcataccttctaatgcagcgacagttccactgaaattgaagaacaataaaagtcctcaaggatatctaaggagccacaatgaattgggtgttcctttgactgatataaaggaggaaacagttcaggtcggcaaggtggaggctttgcgtcttttggtggcttcttttgtacgcgactctgctctaacagatgtcttcatcaggcagctgaagaaagaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

159

Amino Acids

17.91

Weight (kDa)

8.87

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031197)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002253.1_g000040 Rmu_sc0009958.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 219
AccII CGCG 1 cut(s) 429
AciI CCGC 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 136, 219
AgsI TTSAA 3 cut(s) 43, 170, 295
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 136, 463
AluI AGCT 2 cut(s) 136, 463
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 3 cut(s) 60, 272, 460
Asp700I GAANNNNTTC 1 cut(s) 375
AspA2I CCTAGG 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 58, 65, 73
AvaII GGWCC 1 cut(s) 210
AvrII CCTAGG 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 442
BbvI GCAGC 3 cut(s) 72, 284, 472
BccI CCATC 2 cut(s) 140, 167
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 161
BisI GCNGC 3 cut(s) 61, 273, 461
BlnI CCTAGG 1 cut(s) 160
BlsI GCNGC 3 cut(s) 62, 274, 462
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 186, 329
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 69, 100, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 219
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 69, 100, 160
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 136, 219
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 3 cut(s) 72, 284, 472
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 184
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 136, 219
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 186, 329
BspT107I GGYRCC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 69, 100, 160
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 100, 160
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 122, 280, 376
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 21, 323
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 429
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 72, 284, 472
BstV2I GAAGAC 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 160, 220, 284
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 4 cut(s) 14, 64, 101, 392
Csp6I GTAC 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 2 cut(s) 101, 109
CviJI RGCY 8 cut(s) 19, 129, 136, 177, 330, 398, 416, 463
CviKI_1 RGCY 8 cut(s) 19, 129, 136, 177, 330, 398, 416, 463
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 2 cut(s) 21, 323
Eco130I CCWWGG 2 cut(s) 100, 160
Eco147I AGGCCT 1 cut(s) 19
Eco32I GATATC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 68
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 100, 160
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 100, 160
FaeI CATG 2 cut(s) 104, 112
FaiI YATR 8 cut(s) 86, 102, 110, 190, 198, 202, 260, 362
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 100, 108
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 3 cut(s) 61, 273, 461
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 61, 273, 461
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 61, 273, 461
HaeIII GGCC 1 cut(s) 19
HgaI GACGC 4 cut(s) 14, 64, 101, 392
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 104, 112
HinfI GANTC 1 cut(s) 431
HphI GGTGA 3 cut(s) 58, 65, 73
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 3 cut(s) 122, 280, 376
HpyCH4V TGCA 4 cut(s) 60, 200, 229, 272
HpyF3I CTNAG 2 cut(s) 21, 323
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 104, 112
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 33, 55, 82, 122, 139, 215, 226, 365, 442
Lsp1109I GCAGC 3 cut(s) 72, 284, 472
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 161
MboII GAAGA 4 cut(s) 182, 307, 442, 478
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 165, 290, 338
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 4 cut(s) 143, 321, 361, 388
Mph1103I ATGCAT 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 375
MslI CAYNNNNRTG 2 cut(s) 86, 205
MspA1I CMGCKG 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 429
NcoI CCATGG 1 cut(s) 100
NlaIII CATG 2 cut(s) 104, 112
NlaIV GGNNCC 2 cut(s) 186, 329
NsiI ATGCAT 1 cut(s) 202
PceI AGGCCT 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 3 cut(s) 62, 274, 462
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 186, 329
PspPI GGNCC 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 2 cut(s) 86, 205
SatI GCNGC 3 cut(s) 61, 273, 461
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 71, 138, 265, 384, 393, 465
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 86, 205
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 3 cut(s) 165, 290, 338
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 2 cut(s) 100, 160
TaaI ACNGT 3 cut(s) 122, 280, 376
TasI AATT 3 cut(s) 165, 290, 338
TscAI CASTG 3 cut(s) 160, 220, 291
TseI GCWGC 3 cut(s) 60, 272, 460
TspDTI ATGAA 2 cut(s) 351, 442
TspRI CASTG 3 cut(s) 160, 220, 291
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 139
XmaJI CCTAGG 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.