Rmu_sc0010056.1_g000001

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010056.1
OG0029340
Physical Location & Seq
Forward (+)
1 .. 1205
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010056.1_g000001.1.cds

Sequence Viewer

Length: 425 bp
taacttacatgccactgtctgctcctttcagggcctgctatggtgttttgagatttgtcatggaaagtggtgcaaagggttgtgaggtgattgttagtggaaagctgagggcacagagagccaagtccatgaagttcaaggacggatacatgatttcttctggtcagccagtcaatgagtacattgacgcagctgtgagacatgttctccttagacagggtgttcttggtattaaggtcaagatcatgctcgactgggatcccaagggaaagcaaggacccatgactcctctaccggatcttgttacaatccaccaaccaaaggatgatgagtttgtcaggcgggcaccagaaattgaagcagcacctattttggccccaactgatattgaggtcccagccatcccagccctcccagtggcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

140

Amino Acids

15.34

Weight (kDa)

8.93

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029340)

Species Orthologous Gene IDs
pyrus_communis pycom08g05820
rosa_multiflora Rmu_sc0010056.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AciI CCGC 1 cut(s) 342
AclWI GGATC 3 cut(s) 253, 266, 305
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 216, 321, 417
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 138, 358
AluBI AGCT 2 cut(s) 105, 193
AluI AGCT 2 cut(s) 105, 193
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 3 cut(s) 253, 266, 305
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 2 cut(s) 32, 374
ApeKI GCWGC 2 cut(s) 190, 361
AspS9I GGNCC 4 cut(s) 32, 277, 375, 393
AsuHPI GGTGA 1 cut(s) 99
AvaII GGWCC 2 cut(s) 277, 393
BaeGI GKGCMC 2 cut(s) 114, 348
BamHI GGATCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 202, 373
BccI CCATC 1 cut(s) 409
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 192
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 2 cut(s) 191, 362
BlsI GCNGC 2 cut(s) 192, 363
Bme18I GGWCC 2 cut(s) 277, 393
BmgT120I GGNCC 4 cut(s) 32, 277, 375, 393
BmiI GGNNCC 5 cut(s) 260, 279, 347, 377, 395
BmrI ACTGGG 2 cut(s) 264, 409
BmuI ACTGGG 2 cut(s) 264, 409
Bpu10I CCTNAGC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 321, 417
Bse1I ACTGG 3 cut(s) 169, 259, 415
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 330, 401
BseLI CCNNNNNNNGG 3 cut(s) 216, 321, 417
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 3 cut(s) 169, 259, 415
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 2 cut(s) 114, 348
BseXI GCAGC 2 cut(s) 202, 373
BseYI CCCAGC 2 cut(s) 396, 405
BshFI GGCC 2 cut(s) 34, 376
BshNI GGYRCC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 216, 321, 417
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 2 cut(s) 34, 376
Bsp1286I GDGCHC 2 cut(s) 114, 348
Bsp143I GATC 3 cut(s) 242, 258, 297
BspACI CCGC 1 cut(s) 342
BspANI GGCC 2 cut(s) 34, 376
BspCNI CTCAG 1 cut(s) 98
BspLI GGNNCC 5 cut(s) 260, 279, 347, 377, 395
BspPI GGATC 3 cut(s) 253, 266, 305
BspT107I GGYRCC 1 cut(s) 345
BsrI ACTGG 3 cut(s) 169, 259, 415
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 242, 258, 297
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 36, 344
BstDEI CTNAG 2 cut(s) 106, 211
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 330, 401
BstKTI GATC 3 cut(s) 245, 261, 300
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 3 cut(s) 242, 258, 297
BstMWI GCNNNNNNNGC 2 cut(s) 118, 406
BstNSI RCATGY 2 cut(s) 12, 205
BstSLI GKGCMC 2 cut(s) 114, 348
BstV1I GCAGC 2 cut(s) 202, 373
BstX2I RGATCY 2 cut(s) 258, 297
BstYI RGATCY 2 cut(s) 258, 297
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 34, 376
BtsCI GGATG 2 cut(s) 330, 401
BtsIMutI CAGTG 2 cut(s) 13, 422
Cac8I GCNNGC 2 cut(s) 36, 344
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 4 cut(s) 32, 277, 375, 393
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 180
CviAII CATG 7 cut(s) 9, 60, 129, 150, 202, 246, 282
CviJI RGCY 9 cut(s) 34, 105, 121, 168, 193, 376, 400, 409, 421
CviKI_1 RGCY 9 cut(s) 34, 105, 121, 168, 193, 376, 400, 409, 421
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 106, 211
DpnI GATC 3 cut(s) 244, 260, 299
DpnII GATC 3 cut(s) 242, 258, 297
Eco130I CCWWGG 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 277, 393
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoO109I RGGNCCY 3 cut(s) 32, 277, 393
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 7 cut(s) 12, 63, 132, 153, 205, 249, 285
FaiI YATR 8 cut(s) 10, 41, 61, 130, 151, 203, 247, 283
FaqI GGGAC 1 cut(s) 379
FatI CATG 7 cut(s) 8, 59, 128, 149, 201, 245, 281
FauI CCCGC 1 cut(s) 335
Fnu4HI GCNGC 2 cut(s) 191, 362
FokI GGATG 2 cut(s) 337, 388
Fsp4HI GCNGC 2 cut(s) 191, 362
GluI GCNGC 2 cut(s) 191, 362
GsaI CCCAGC 2 cut(s) 400, 409
HaeIII GGCC 2 cut(s) 34, 376
HapII CCGG 1 cut(s) 295
HgaI GACGC 1 cut(s) 196
Hin1II CATG 7 cut(s) 12, 63, 132, 153, 205, 249, 285
HinfI GANTC 1 cut(s) 285
HpaII CCGG 1 cut(s) 295
HphI GGTGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 406
HpyF3I CTNAG 2 cut(s) 106, 211
Hsp92II CATG 7 cut(s) 12, 63, 132, 153, 205, 249, 285
Kzo9I GATC 3 cut(s) 242, 258, 297
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 2 cut(s) 202, 373
MaeIII GTNAC 1 cut(s) 303
MalI GATC 3 cut(s) 244, 260, 299
MboI GATC 3 cut(s) 242, 258, 297
MboII GAAGA 1 cut(s) 149
MflI RGATCY 2 cut(s) 258, 297
MhlI GDGCHC 2 cut(s) 114, 348
MluCI AATT 1 cut(s) 353
MlyI GAGTC 1 cut(s) 279
MnlI CCTC 5 cut(s) 78, 101, 299, 384, 421
MseI TTAA 2 cut(s) 233, 423
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 118, 406
NdeII GATC 3 cut(s) 242, 258, 297
NlaIII CATG 7 cut(s) 12, 63, 132, 153, 205, 249, 285
NlaIV GGNNCC 5 cut(s) 260, 279, 347, 377, 395
NspI RCATGY 2 cut(s) 12, 205
PciI ACATGT 1 cut(s) 201
PkrI GCNGC 2 cut(s) 192, 363
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PpuMI RGGWCCY 2 cut(s) 277, 393
PscI ACATGT 1 cut(s) 201
Psp5II RGGWCCY 2 cut(s) 277, 393
PspFI CCCAGC 2 cut(s) 396, 405
PspN4I GGNNCC 5 cut(s) 260, 279, 347, 377, 395
PspPI GGNCC 4 cut(s) 32, 277, 375, 393
PspPPI RGGWCCY 2 cut(s) 277, 393
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 2 cut(s) 258, 297
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 233, 423
SatI GCNGC 2 cut(s) 191, 362
Sau3AI GATC 3 cut(s) 242, 258, 297
Sau96I GGNCC 4 cut(s) 32, 277, 375, 393
SchI GAGTC 1 cut(s) 279
SduI GDGCHC 2 cut(s) 114, 348
SetI ASST 6 cut(s) 89, 107, 195, 239, 369, 395
SinI GGWCC 2 cut(s) 277, 393
Sse9I AATT 1 cut(s) 353
SsiI CCGC 1 cut(s) 342
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 251
TasI AATT 1 cut(s) 353
TatI WGTACW 1 cut(s) 179
Tru1I TTAA 2 cut(s) 233, 423
Tru9I TTAA 2 cut(s) 233, 423
TscAI CASTG 2 cut(s) 20, 422
TseI GCWGC 2 cut(s) 190, 361
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 20, 422
VpaK11BI GGWCC 2 cut(s) 277, 393
XagI CCTNNNNNAGG 1 cut(s) 214
XceI RCATGY 2 cut(s) 12, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.