Rmu_sc0010369.1_g000005

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010369.1
OG0026654
Physical Location & Seq
Reverse (-)
20295 .. 20787
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010369.1_g000005.1.cds

Sequence Viewer

Length: 411 bp
atgcatcgttggtctagaattcaactggatgtgaacaaattttgtgactattatgctgaaattgaaaggacaagagcaagtggtacaactgaacaagataggattgtggaagccaaacaaaattttaggagggatcgaggatacaactttacatatgagcattgttggcatgtgttgaagttccacccaaaatggaactttgaactctctaggaaaaaaccaaagaaaactcatgctacggttcctgctacttcctctcctatcactccatctgctagcccaaatacaatagatttagctgatggcaatgttgaaggcaatgagtctccatacttagagaggcctataggcaaaaaggctgccaagaccttggcaaggaagagaaagtggaagcagcccaatctgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

136

Amino Acids

15.94

Weight (kDa)

9.88

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026654)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0010369.1_g000005
rosa_samantha Rh5BG276600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 3 cut(s) 18, 38, 121
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 5 cut(s) 23, 65, 178, 203, 314
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 141
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 359, 394
ApoI RAATTY 3 cut(s) 18, 38, 121
AsuNHI GCTAGC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 346, 406
BccI CCATC 2 cut(s) 277, 296
BciVI GTATCC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 3 cut(s) 15, 210, 276
BfmI CTRYAG 1 cut(s) 345
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 2 cut(s) 360, 395
BlsI GCNGC 2 cut(s) 361, 396
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 13
BmtI GCTAGC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 313, 325
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 2 cut(s) 313, 325
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 346, 406
BshFI GGCC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 313, 325
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 346, 406
BstXI CCANNNNNNTGG 1 cut(s) 370
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 84
CviAII CATG 2 cut(s) 170, 233
CviJI RGCY 6 cut(s) 113, 279, 299, 343, 359, 397
CviKI_1 RGCY 6 cut(s) 113, 279, 299, 343, 359, 397
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 334
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 173, 236
FaiI YATR 7 cut(s) 54, 154, 156, 171, 234, 331, 347
FatI CATG 2 cut(s) 169, 232
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 360, 395
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 360, 395
FspBI CTAG 3 cut(s) 15, 210, 276
GluI GCNGC 2 cut(s) 360, 395
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 2 cut(s) 173, 236
HinfI GANTC 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 2 cut(s) 173, 236
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 11, 258
Lsp1109I GCAGC 2 cut(s) 346, 406
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 15, 210, 276
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 391
MluCI AATT 5 cut(s) 18, 38, 60, 121, 406
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 4 cut(s) 123, 131, 265, 333
Mph1103I ATGCAT 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 133
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 2 cut(s) 173, 236
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 173
PceI AGGCCT 1 cut(s) 343
PkrI GCNGC 2 cut(s) 361, 396
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 243
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 2 cut(s) 360, 395
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 332
SetI ASST 2 cut(s) 301, 371
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 345
Sse9I AATT 5 cut(s) 18, 38, 60, 121, 406
SseBI AGGCCT 1 cut(s) 343
SspMI CTAG 3 cut(s) 15, 210, 276
StuI AGGCCT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 136
TasI AATT 5 cut(s) 18, 38, 60, 121, 406
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 359, 394
Tsp45I GTSAC 1 cut(s) 44
XagI CCTNNNNNAGG 1 cut(s) 373
XapI RAATTY 3 cut(s) 18, 38, 121
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 1 cut(s) 173
XspI CTAG 3 cut(s) 15, 210, 276
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.