Rmu_sc0012667.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012667.1
Physical Location & Seq
Forward (+)
2006 .. 2359
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012667.1_g000002.1.cds

Sequence Viewer

Length: 216 bp
atggacaaggagagcaccaacctcgtcacaaggctcttttctctgccttccggaaaagaacttcttgccttactgggcattacccttgcttcgctgggttgcggtagtactagcagtctgctcctggggagactaggactggaagtacagtcgcggggtttcaacgaggttgaaggtttgctccggagaggcttgataatctgtgcgaatagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.49

Weight (kDa)

7.81

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025466)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AccIII TCCGGA 2 cut(s) 50, 183
AciI CCGC 2 cut(s) 102, 154
AfaI GTAC 2 cut(s) 109, 147
AgsI TTSAA 2 cut(s) 163, 173
AjnI CCWGG 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 124
Aor13HI TCCGGA 2 cut(s) 50, 183
Bbv12I GWGCWC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 2 cut(s) 111, 134
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 2 cut(s) 50, 183
Bse1I ACTGG 2 cut(s) 78, 144
BseAI TCCGGA 2 cut(s) 50, 183
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 78, 144
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 51, 184
BsmAI GTCTC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 17
Bsp13I TCCGGA 2 cut(s) 50, 183
BspACI CCGC 2 cut(s) 102, 154
BspEI TCCGGA 2 cut(s) 50, 183
BspFNI CGCG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 78, 144
BssECI CCNNGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 150
BstFNI CGCG 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 1 cut(s) 154
Csp6I GTAC 2 cut(s) 108, 146
CviJI RGCY 2 cut(s) 34, 192
CviKI_1 RGCY 2 cut(s) 34, 192
CviQI GTAC 2 cut(s) 108, 146
EcoRII CCWGG 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FauI CCCGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 111, 134
GsaI CCCAGC 1 cut(s) 98
HapII CCGG 2 cut(s) 51, 184
HpaII CCGG 2 cut(s) 51, 184
Hpy188III TCNNGA 2 cut(s) 51, 184
HpyAV CCTTC 2 cut(s) 57, 167
HpyCH4III ACNGT 1 cut(s) 150
Kpn2I TCCGGA 2 cut(s) 50, 183
LmnI GCTCC 2 cut(s) 126, 186
LpnPI CCDG 7 cut(s) 59, 64, 80, 110, 125, 137, 197
MaeI CTAG 2 cut(s) 111, 134
MaeIII GTNAC 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 17
MnlI CCTC 3 cut(s) 32, 160, 182
MroI TCCGGA 2 cut(s) 50, 183
MspI CCGG 2 cut(s) 51, 184
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 123
RsaI GTAC 2 cut(s) 109, 147
RsaNI GTAC 2 cut(s) 108, 146
ScaI AGTACT 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 17
SetI ASST 3 cut(s) 24, 171, 178
SsiI CCGC 2 cut(s) 102, 154
SspMI CTAG 2 cut(s) 111, 134
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 150
TatI WGTACW 2 cut(s) 107, 145
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
XspI CTAG 2 cut(s) 111, 134
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.