Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012920.1

Orthogroup ID

OG0031095

Physical Location & Seq

Genomic Coordinates Reverse (-)

6129 .. 6695

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012920.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcttcgtcagactcccttttacagtggggacaatggaaactgcttgattctatcctcccaaccagtggttttgctcattcctttggtcttgaggctgcaaaccaacctcagatggtctcgggtcctgaagatcgatcttcaacctttcgtaattcatctgttagagaatactgcaaccttactccttccttttgtgtattctactacaatatcacctgatttggagaccttgcggaaacatgacaagatgttggacgtaatgctaactaataaagtgggtagaaaggcatcaatagcccaagggtctgcactcgtgagagtggctgcagcagtgtattcagaaatacagtctcttaaatccatgagggaaacttctttaagtaatggagttgtttcttttcaccgtgctcctatttttgggcttgtatgtggatttcttgagttggatagcagtacttctcaaagagctttcatgtttatcacaatgagagatgttatttctgctgcaacaaggctgaatttggtctgcaacatcatattgctcctatctctgaagccatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UreF

Protein Analysis

188

Amino Acids

20.97

Weight (kDa)

9.67

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031095)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000749.1_g000038 Rmu_sc0012920.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	67, 419
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	3 cut(s)	123, 221, 357
Ama87I	CYCGRG	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	97, 326, 329, 506
ApoI	RAATTY	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	207, 395
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	84, 313, 341, 493
BccI	CCATC	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	123, 221, 357
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	4 cut(s)	98, 327, 330, 507
BlsI	GCNGC	4 cut(s)	99, 328, 331, 508
BmcAI	AGTACT	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	125
BmsI	GCATC	1 cut(s)	299
BpuEI	CTTGAG	2 cut(s)	112, 461
Bsa29I	ATCGAT	1 cut(s)	135
BsaI	GGTCTC	2 cut(s)	123, 221
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 419
Bse1I	ACTGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	67, 419
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	84, 313, 341, 493
BsgI	GTGCAG	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	67, 419
BsmAI	GTCTC	3 cut(s)	123, 221, 357
BsmFI	GGGAC	1 cut(s)	44
Bso31I	GGTCTC	2 cut(s)	123, 221
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	132, 136
BspACI	CCGC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	331
BspTNI	GGTCTC	2 cut(s)	123, 221
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	132, 136
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	26, 351, 407
BstDEI	CTNAG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	135, 139
BstMAI	GTCTC	3 cut(s)	123, 221, 357
BstMBI	GATC	2 cut(s)	132, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	4 cut(s)	84, 313, 341, 493
Bsu15I	ATCGAT	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	31, 72, 339
Cfr13I	GGNCC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	3 cut(s)	242, 364, 475
CviJI	RGCY	7 cut(s)	97, 299, 326, 424, 470, 517, 559
CviKI_1	RGCY	7 cut(s)	97, 299, 326, 424, 470, 517, 559
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	134, 138
DpnII	GATC	2 cut(s)	132, 136
Eco130I	CCWWGG	1 cut(s)	301
Eco31I	GGTCTC	2 cut(s)	123, 221
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	245, 367, 478
FaiI	YATR	6 cut(s)	243, 365, 430, 476, 539, 562
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	241, 363, 474
Fnu4HI	GCNGC	4 cut(s)	98, 327, 330, 507
Fsp4HI	GCNGC	4 cut(s)	98, 327, 330, 507
GluI	GCNGC	4 cut(s)	98, 327, 330, 507
Hin1II	CATG	3 cut(s)	245, 367, 478
HinfI	GANTC	2 cut(s)	13, 49
HphI	GGTGA	2 cut(s)	207, 395
Hpy188I	TCNGA	4 cut(s)	12, 113, 343, 555
Hpy188III	TCNNGA	4 cut(s)	91, 127, 316, 440
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	3 cut(s)	26, 351, 407
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	6 cut(s)	100, 176, 311, 329, 509, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	245, 367, 478
Kzo9I	GATC	2 cut(s)	132, 136
LmnI	GCTCC	2 cut(s)	415, 549
LpnPI	CCDG	3 cut(s)	78, 140, 231
Lsp1109I	GCAGC	4 cut(s)	84, 313, 341, 493
LweI	GCATC	1 cut(s)	299
MaeII	ACGT	1 cut(s)	258
MalI	GATC	2 cut(s)	134, 138
MboI	GATC	2 cut(s)	132, 136
MboII	GAAGA	2 cut(s)	131, 142
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	2 cut(s)	153, 520
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	234, 426
MnlI	CCTC	4 cut(s)	67, 87, 119, 360
MseI	TTAA	2 cut(s)	357, 380
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	132, 136
NlaIII	CATG	3 cut(s)	245, 367, 478
NlaIV	GGNNCC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	4 cut(s)	99, 328, 331, 508
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	124
PspPPI	RGGWCCY	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	357, 380
SatI	GCNGC	4 cut(s)	98, 327, 330, 507
Sau3AI	GATC	2 cut(s)	132, 136
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	7 cut(s)	111, 148, 182, 220, 233, 261, 472
SfaNI	GCATC	1 cut(s)	299
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	91, 440
SmoI	CTYRAG	2 cut(s)	91, 440
Sse9I	AATT	2 cut(s)	153, 520
SsiI	CCGC	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	26, 351, 407
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	153, 520
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	357, 380
Tru9I	TTAA	2 cut(s)	357, 380
TscAI	CASTG	3 cut(s)	31, 72, 339
TseI	GCWGC	4 cut(s)	97, 326, 329, 506
TspDTI	ATGAA	2 cut(s)	146, 463
TspRI	CASTG	3 cut(s)	31, 72, 339
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	520
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.