Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016643.1

Orthogroup ID

OG0031496

Physical Location & Seq

Genomic Coordinates Reverse (-)

42667 .. 43346

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016643.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgcttttgaattctcaatgttgtctgaaagttttggtccttcaaaagtgccagcttgggatctctggcattctgcaaattatccaggcattatcaggtaatgcttttcttgaagagctcaatcttgctgaaaatgcggatattggtaaagagtactctgcaccatatgacgtggcagaaaaagggagtgtcggactctcacagccaaacctcaatatgcttgaatcttctccattggtatctgtgctcaaagatgttagccagcttgaagttgctgatagtgaagatgatgaagttggggttgaagctgctgcatctgcacgcaacgagaactgttcaagctcatttcaaagaaattcctcatccactgagtgccagtttcttgaagacttttcaactgccattgatatggcaaagaatctgcggttcctcgaccttagcaaaaatggtttctccacacaatgtgcagagatactttattcgtcatggtcaagatcaagatctgtttcagctcggaggcatgtcaaggacaagatcatccacttctttgtggaaggaatgatgtgttgcgtgaaaccctgctgcaggaaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_2 TPR_7 TPR_8

Protein Analysis

198

Amino Acids

21.75

Weight (kDa)

4.94

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031496)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8368697.1_g000001 Rmu_sc0016643.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 424
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	10, 355
AdeI	CACNNNGTG	2 cut(s)	372, 464
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	585
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	6 cut(s)	55, 118, 265, 308, 342, 512
AluI	AGCT	6 cut(s)	55, 118, 265, 308, 342, 512
Alw21I	GWGCWC	2 cut(s)	120, 249
AlwI	GGATC	1 cut(s)	68
ApeKI	GCWGC	3 cut(s)	308, 311, 582
ApoI	RAATTY	2 cut(s)	10, 355
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	120, 249
BbvI	GCAGC	3 cut(s)	295, 298, 569
BciT130I	CCWGG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	583
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	3 cut(s)	309, 312, 583
BlsI	GCNGC	3 cut(s)	310, 313, 584
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	1 cut(s)	585
Bse1I	ACTGG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	362, 537
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	295, 298, 569
BsgI	GTGCAG	3 cut(s)	144, 303, 486
BsiHKAI	GWGCWC	2 cut(s)	120, 249
BslI	CCNNNNNNNGG	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	120, 249
Bsp143I	GATC	4 cut(s)	60, 494, 500, 534
BspACI	CCGC	2 cut(s)	137, 424
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	587
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	376
BssMI	GATC	4 cut(s)	60, 494, 500, 534
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	53, 263, 322
BstDEI	CTNAG	2 cut(s)	369, 437
BstENI	CCTNNNNNAGG	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	362, 537
BstKTI	GATC	4 cut(s)	63, 497, 503, 537
BstMBI	GATC	4 cut(s)	60, 494, 500, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 317
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	583
BstV1I	GCAGC	3 cut(s)	295, 298, 569
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	60, 500
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	2 cut(s)	60, 500
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	362, 537
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	3 cut(s)	53, 263, 322
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	486, 521
CviJI	RGCY	8 cut(s)	55, 118, 205, 261, 265, 308, 342, 512
CviKI_1	RGCY	8 cut(s)	55, 118, 205, 261, 265, 308, 342, 512
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	369, 437
DpnI	GATC	4 cut(s)	62, 496, 502, 536
DpnII	GATC	4 cut(s)	60, 494, 500, 534
DraIII	CACNNNGTG	2 cut(s)	372, 464
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	2 cut(s)	489, 524
FaiI	YATR	6 cut(s)	166, 168, 218, 410, 487, 522
FatI	CATG	2 cut(s)	485, 520
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	309, 312, 583
FokI	GGATG	2 cut(s)	349, 524
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	309, 312, 583
GluI	GCNGC	3 cut(s)	309, 312, 583
Hin1II	CATG	2 cut(s)	489, 524
HinfI	GANTC	3 cut(s)	195, 224, 418
Hpy188I	TCNGA	3 cut(s)	27, 194, 516
Hpy188III	TCNNGA	4 cut(s)	110, 383, 492, 498
HpyAV	CCTTC	3 cut(s)	50, 548, 583
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	6 cut(s)	76, 161, 314, 320, 467, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 317
HpyF3I	CTNAG	2 cut(s)	369, 437
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	489, 524
Kzo9I	GATC	4 cut(s)	60, 494, 500, 534
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	9 cut(s)	51, 65, 71, 81, 98, 275, 389, 571, 592
Lsp1109I	GCAGC	3 cut(s)	295, 298, 569
LweI	GCATC	1 cut(s)	323
MaeII	ACGT	1 cut(s)	171
MalI	GATC	4 cut(s)	62, 496, 502, 536
MboI	GATC	4 cut(s)	60, 494, 500, 534
MboII	GAAGA	4 cut(s)	125, 219, 296, 398
MflI	RGATCY	2 cut(s)	60, 500
MhlI	GDGCHC	2 cut(s)	120, 249
MluCI	AATT	3 cut(s)	10, 78, 355
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	221, 370, 440, 510
MslI	CAYNNNNRTG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	134, 317
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	4 cut(s)	60, 494, 500, 534
NlaIII	CATG	2 cut(s)	489, 524
NlaIV	GGNNCC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	224, 418
PkrI	GCNGC	3 cut(s)	310, 313, 584
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	60, 500
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	3 cut(s)	309, 312, 583
Sau3AI	GATC	4 cut(s)	60, 494, 500, 534
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	120, 249
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	583
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	10, 78, 355
SsiI	CCGC	2 cut(s)	137, 424
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	10, 78, 355
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	224, 418
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	3 cut(s)	308, 311, 582
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	583
XapI	RAATTY	2 cut(s)	10, 355
XceI	RCATGY	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.