Rmu_sc0017106.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017106.1
OG0031238
Physical Location & Seq
Reverse (-)
11702 .. 12589
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017106.1_g000004.1.cds

Sequence Viewer

Length: 888 bp
atggttgaaaataacccaagaaatctatgggttgcgcttgaagagtgctttgggaatgtccaaaactcccaaaatctccgcttcgtagactataagttgaataagcttgacttcgccccattggacactactggccgtggataccacaactgggtatgtgatgtcaaaaatcacctcactgccaaagggatcctagcaacaatccagcccaccaactttgatttgattgcgcagggcatcgatgtgtacaaagccaaggcccttatcttgatgacgcgccatatggacgagtcgcttcaactcaagtatatggttgaaaacaacccaagaaatctatgggttgcgcttgaagagcgctttgagaatgttcaaaactcccatctcccagaattgtgcgagagatggcaaaatctctgtttcacggactataagtcagtgttagagtactattcagaagccctcaacatcagatcaatgatgcaagtttgtaatcaaactattacagatgaaaacctaattgagaaaactctctccaccttccccatctctgctaggatgctagctatgcaatatcgaattagtattcaagcaggacagatcaagggatttcatcagctgattacagcgatgaccgtagttgagaaacacgataatattctcatgaagaattataattcccgatctgtcagaacaaaagctgtttcagagttgaattataataacgctccaaaaggaggtcgtcgccagcaaaaccctaaacttaagggaaaacaattcagacgatttggtctgtacaatcgctcagtgcaggaaggagagtgccttaaccatcaacgtgacaagcgccgtggtcgtggaggccgccgcggactaagaaagcctctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

295

Amino Acids

34.37

Weight (kDa)

9.57

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031238)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002993.1_g000005 Rmu_sc0017106.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 672, 717
AasI GACNNNNNNGTC 1 cut(s) 786
Acc16I TGCGCA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 87
AccII CGCG 2 cut(s) 277, 867
AciI CCGC 4 cut(s) 79, 862, 865, 867
AclWI GGATC 2 cut(s) 184, 197
AcoI YGGCCR 1 cut(s) 133
AfaI GTAC 3 cut(s) 248, 446, 794
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 151, 734
AflII CTTAAG 1 cut(s) 761
AgsI TTSAA 9 cut(s) 8, 41, 100, 299, 317, 350, 371, 587, 712
AhdI GACNNNNNGTC 1 cut(s) 430
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 4 cut(s) 106, 563, 616, 698
AluI AGCT 4 cut(s) 106, 563, 616, 698
AlwI GGATC 2 cut(s) 184, 197
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 3 cut(s) 133, 258, 859
AspLEI GCGC 6 cut(s) 37, 232, 279, 346, 357, 846
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 559
BamHI GGATCC 1 cut(s) 189
BccI CCATC 4 cut(s) 387, 396, 551, 837
BceAI ACGGC 2 cut(s) 120, 831
BciVI GTATCC 1 cut(s) 134
BfaI CTAG 3 cut(s) 194, 552, 560
BfoI RGCGCY 2 cut(s) 358, 847
BfrI CTTAAG 1 cut(s) 761
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 2 cut(s) 862, 865
BlsI GCNGC 2 cut(s) 863, 866
BmcAI AGTACT 1 cut(s) 446
BmeRI GACNNNNNGTC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 246, 468, 546
BmtI GCTAGC 1 cut(s) 563
BmuI ACTGGG 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 240
BsaJI CCNNGG 4 cut(s) 136, 255, 847, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 734
Bse1I ACTGG 2 cut(s) 136, 155
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 136, 255, 847, 865
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 151, 734
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 2 cut(s) 136, 155
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 2 cut(s) 277, 867
BshFI GGCC 3 cut(s) 135, 260, 861
BshVI ATCGAT 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 151, 734
BsnI GGCC 3 cut(s) 135, 260, 861
Bsp1407I TGTACA 2 cut(s) 246, 792
Bsp143I GATC 4 cut(s) 189, 470, 597, 680
BspACI CCGC 4 cut(s) 79, 862, 865, 867
BspANI GGCC 3 cut(s) 135, 260, 861
BspCNI CTCAG 1 cut(s) 815
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 2 cut(s) 277, 867
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 1 cut(s) 191
BspOI GCTAGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 184, 197
BspQI GCTCTTC 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 761
BsrGI TGTACA 2 cut(s) 246, 792
BsrI ACTGG 2 cut(s) 136, 155
BssECI CCNNGG 4 cut(s) 136, 255, 847, 865
BssMI GATC 4 cut(s) 189, 470, 597, 680
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 2 cut(s) 36, 345
BstAFI CTTAAG 1 cut(s) 761
BstAUI TGTACA 2 cut(s) 246, 792
BstC8I GCNNGC 2 cut(s) 561, 746
BstDEI CTNAG 2 cut(s) 802, 872
BstDSI CCRYGG 3 cut(s) 136, 847, 865
BstF5I GGATG 1 cut(s) 561
BstFNI CGCG 2 cut(s) 277, 867
BstH2I RGCGCY 2 cut(s) 358, 847
BstHHI GCGC 6 cut(s) 37, 232, 279, 346, 357, 846
BstKTI GATC 4 cut(s) 192, 473, 600, 683
BstMBI GATC 4 cut(s) 189, 470, 597, 680
BstMWI GCNNNNNNNGC 2 cut(s) 352, 565
BstUI CGCG 2 cut(s) 277, 867
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 240
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 3 cut(s) 135, 260, 861
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 3 cut(s) 136, 847, 865
BtgZI GCGATG 1 cut(s) 641
BtsCI GGATG 1 cut(s) 561
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 3 cut(s) 177, 441, 810
Cac8I GCNNGC 2 cut(s) 561, 746
CciI TCATGA 1 cut(s) 660
CfoI GCGC 6 cut(s) 37, 232, 279, 346, 357, 846
Cfr13I GGNCC 1 cut(s) 259
Cfr42I CCGCGG 1 cut(s) 868
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 1 cut(s) 283
Csp6I GTAC 3 cut(s) 247, 445, 793
CspCI CAANNNNNGTGG 4 cut(s) 199, 234, 829, 864
CviAII CATG 1 cut(s) 661
CviQI GTAC 3 cut(s) 247, 445, 793
DdeI CTNAG 2 cut(s) 802, 872
DpnI GATC 4 cut(s) 191, 472, 599, 682
DpnII GATC 4 cut(s) 189, 470, 597, 680
DrdI GACNNNNNNGTC 1 cut(s) 786
DriI GACNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 36, 345
Eam1105I GACNNNNNGTC 1 cut(s) 430
EarI CTCTTC 2 cut(s) 36, 345
Eco130I CCWWGG 1 cut(s) 255
Eco47III AGCGCT 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 664
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 1 cut(s) 660
FauNDI CATATG 1 cut(s) 282
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 862, 865
FokI GGATG 1 cut(s) 568
Fsp4HI GCNGC 2 cut(s) 862, 865
FspBI CTAG 3 cut(s) 194, 552, 560
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 6 cut(s) 36, 231, 278, 345, 356, 845
GluI GCNGC 2 cut(s) 862, 865
HaeII RGCGCY 2 cut(s) 358, 847
HaeIII GGCC 3 cut(s) 135, 260, 861
HgaI GACGC 1 cut(s) 283
HhaI GCGC 6 cut(s) 37, 232, 279, 346, 357, 846
Hin1II CATG 1 cut(s) 664
Hin6I GCGC 6 cut(s) 35, 230, 277, 344, 355, 844
HinP1I GCGC 6 cut(s) 35, 230, 277, 344, 355, 844
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 290
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 88, 247
Hpy188I TCNGA 5 cut(s) 454, 470, 689, 706, 779
Hpy188III TCNNGA 3 cut(s) 268, 661, 678
Hpy8I GTNNAC 2 cut(s) 88, 247
Hpy99I CGWCG 1 cut(s) 744
HpyAV CCTTC 2 cut(s) 547, 806
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 3 cut(s) 481, 568, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 565
HpyF3I CTNAG 2 cut(s) 802, 872
HpySE526I ACGT 1 cut(s) 835
Hsp92II CATG 1 cut(s) 664
HspAI GCGC 6 cut(s) 35, 230, 277, 344, 355, 844
KspI CCGCGG 1 cut(s) 868
Kzo9I GATC 4 cut(s) 189, 470, 597, 680
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 730
LpnPI CCDG 8 cut(s) 117, 136, 218, 218, 399, 576, 758, 794
LweI GCATC 3 cut(s) 246, 468, 546
MaeI CTAG 3 cut(s) 194, 552, 560
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 1 cut(s) 836
MalI GATC 4 cut(s) 191, 472, 599, 682
MboI GATC 4 cut(s) 189, 470, 597, 680
MboII GAAGA 3 cut(s) 53, 362, 676
MflI RGATCY 1 cut(s) 189
MluCI AATT 7 cut(s) 389, 516, 576, 667, 673, 712, 773
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 4 cut(s) 185, 470, 728, 851
MseI TTAA 3 cut(s) 762, 825, 886
MslI CAYNNNNRTG 2 cut(s) 242, 834
MspA1I CMGCKG 2 cut(s) 616, 867
MspCI CTTAAG 1 cut(s) 761
MvnI CGCG 2 cut(s) 277, 867
MwoI GCNNNNNNNGC 2 cut(s) 352, 565
NdeI CATATG 1 cut(s) 282
NdeII GATC 4 cut(s) 189, 470, 597, 680
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 1 cut(s) 664
NlaIV GGNNCC 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 836
NsbI TGCGCA 1 cut(s) 231
PagI TCATGA 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 345
PkrI GCNGC 2 cut(s) 863, 866
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PsiI TTATAA 2 cut(s) 672, 717
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 3 cut(s) 248, 446, 794
RsaNI GTAC 3 cut(s) 247, 445, 793
RseI CAYNNNNRTG 2 cut(s) 242, 834
SacII CCGCGG 1 cut(s) 868
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 762, 825, 886
SatI GCNGC 2 cut(s) 862, 865
Sau3AI GATC 4 cut(s) 189, 470, 597, 680
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 299
SetI ASST 9 cut(s) 108, 177, 516, 539, 565, 618, 700, 739, 838
SfaNI GCATC 3 cut(s) 246, 468, 546
Sfr303I CCGCGG 1 cut(s) 868
SgrBI CCGCGG 1 cut(s) 868
SmiMI CAYNNNNRTG 2 cut(s) 242, 834
SmlI CTYRAG 2 cut(s) 302, 761
SmoI CTYRAG 2 cut(s) 302, 761
Sse9I AATT 7 cut(s) 389, 516, 576, 667, 673, 712, 773
SsiI CCGC 4 cut(s) 79, 862, 865, 867
SspI AATATT 1 cut(s) 655
SspMI CTAG 3 cut(s) 194, 552, 560
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 634
TaiI ACGT 1 cut(s) 838
TaqI TCGA 2 cut(s) 240, 574
TasI AATT 7 cut(s) 389, 516, 576, 667, 673, 712, 773
TatI WGTACW 3 cut(s) 246, 444, 792
TauI GCSGC 2 cut(s) 864, 867
Tru1I TTAA 3 cut(s) 762, 825, 886
Tru9I TTAA 3 cut(s) 762, 825, 886
TscAI CASTG 3 cut(s) 184, 441, 810
TseFI GTSAC 1 cut(s) 836
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 3 cut(s) 522, 599, 677
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 3 cut(s) 184, 441, 810
Vha464I CTTAAG 1 cut(s) 761
XcmI CCANNNNNNNNNTGG 2 cut(s) 24, 333
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 3 cut(s) 194, 552, 560
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.