Rmu_sc0017957.1_g000001

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017957.1
Physical Location & Seq
Forward (+)
1 .. 992
992 bp
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UTR
Exon/CDS
Intron
Rmu_sc0017957.1_g000001.1.cds

Sequence Viewer

Length: 233 bp
aaaggatcacggatggaagcaatggagatgtggctaatgatcaatatcaccactataaggaagatgtggggattatgaagaatatgaatttggatgcttataggttctctatctcatggtcaagattattaccaaatggaaagctaagtgggggagtgaacaaggaaggagtcaagtactacaacaatctcatcaatgaactcctacgcaatggttatgcaactaaatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.63

Weight (kDa)

8.97

Isoelectric Point (pI)

23.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029349)

Species Orthologous Gene IDs
pyrus_communis pycom08g12050
rosa_multiflora Rmu_sc0017957.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AlwI GGATC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 40
BccI CCATC 1 cut(s) 7
BclI TGATCA 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 178
BmsI GCATC 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse3DI GCAATG 2 cut(s) 27, 216
Bse8I GATNNNNATC 1 cut(s) 44
BseGI GGATG 2 cut(s) 18, 99
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 2 cut(s) 27, 216
BslI CCNNNNNNNGG 1 cut(s) 57
Bsp143I GATC 2 cut(s) 5, 39
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 27, 216
BssMI GATC 2 cut(s) 5, 39
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 18, 99
BstKTI GATC 2 cut(s) 8, 42
BstMBI GATC 2 cut(s) 5, 39
BtsCI GGATG 2 cut(s) 18, 99
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 116
CviJI RGCY 2 cut(s) 34, 144
CviKI_1 RGCY 2 cut(s) 34, 144
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 7, 41
DpnII GATC 2 cut(s) 5, 39
FaeI CATG 1 cut(s) 119
FaiI YATR 6 cut(s) 56, 76, 85, 101, 117, 218
FatI CATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 39
FokI GGATG 2 cut(s) 25, 106
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 170
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 5, 39
LweI GCATC 1 cut(s) 84
MalI GATC 2 cut(s) 7, 41
MboI GATC 2 cut(s) 5, 39
MboII GAAGA 2 cut(s) 73, 90
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 179
MseI TTAA 1 cut(s) 231
NdeII GATC 2 cut(s) 5, 39
NlaIII CATG 1 cut(s) 119
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 2 cut(s) 5, 39
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 179
SetI ASST 2 cut(s) 106, 146
SfaNI GCATC 1 cut(s) 84
SgeI CNNG 5 cut(s) 21, 128, 134, 174, 186
Sse9I AATT 1 cut(s) 87
TasI AATT 1 cut(s) 87
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TspDTI ATGAA 3 cut(s) 91, 100, 212
TspGWI ACGGA 1 cut(s) 25
XapI RAATTY 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.