Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0373421 |
| rosa_multiflora | Rmu_sc0019006.1_g000004 |
| rosa_samantha | Rh1AG386700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 635 |
| AccI | GTMKAC | 1 cut(s) | 122 |
| AciI | CCGC | 2 cut(s) | 37, 365 |
| AcsI | RAATTY | 3 cut(s) | 115, 235, 328 |
| AfaI | GTAC | 1 cut(s) | 77 |
| AflIII | ACRYGT | 2 cut(s) | 908, 992 |
| AgsI | TTSAA | 7 cut(s) | 142, 259, 275, 333, 517, 561, 999 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 895, 927, 979, 1011, 1057, 1089 |
| AluBI | AGCT | 5 cut(s) | 216, 890, 974, 1052, 1111 |
| AluI | AGCT | 5 cut(s) | 216, 890, 974, 1052, 1111 |
| Alw21I | GWGCWC | 2 cut(s) | 283, 1113 |
| Alw44I | GTGCAC | 1 cut(s) | 279 |
| ApaLI | GTGCAC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 4 cut(s) | 362, 890, 974, 1052 |
| ApoI | RAATTY | 3 cut(s) | 115, 235, 328 |
| AsuHPI | GGTGA | 2 cut(s) | 188, 244 |
| BaeGI | GKGCMC | 1 cut(s) | 283 |
| BanII | GRGCYC | 1 cut(s) | 1113 |
| Bbv12I | GWGCWC | 2 cut(s) | 283, 1113 |
| BbvI | GCAGC | 4 cut(s) | 349, 877, 961, 1039 |
| BccI | CCATC | 3 cut(s) | 238, 598, 766 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BciVI | GTATCC | 1 cut(s) | 116 |
| BfaI | CTAG | 1 cut(s) | 548 |
| BfuAI | ACCTGC | 1 cut(s) | 635 |
| BfuI | GTATCC | 1 cut(s) | 116 |
| BisI | GCNGC | 4 cut(s) | 363, 891, 975, 1053 |
| BlsI | GCNGC | 4 cut(s) | 364, 892, 976, 1054 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BmrI | ACTGGG | 1 cut(s) | 215 |
| BmsI | GCATC | 2 cut(s) | 81, 571 |
| BmuI | ACTGGG | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 3 cut(s) | 404, 986, 1064 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 366, 396 |
| Bse1I | ACTGG | 1 cut(s) | 210 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 3 cut(s) | 404, 986, 1064 |
| BseNI | ACTGG | 1 cut(s) | 210 |
| BseSI | GKGCMC | 1 cut(s) | 283 |
| BseXI | GCAGC | 4 cut(s) | 349, 877, 961, 1039 |
| BsiHKAI | GWGCWC | 2 cut(s) | 283, 1113 |
| Bsp1286I | GDGCHC | 2 cut(s) | 283, 1113 |
| BspACI | CCGC | 2 cut(s) | 37, 365 |
| BspMI | ACCTGC | 1 cut(s) | 635 |
| BspQI | GCTCTTC | 1 cut(s) | 1101 |
| BsrI | ACTGG | 1 cut(s) | 210 |
| BssECI | CCNNGG | 3 cut(s) | 404, 986, 1064 |
| BssNAI | GTATAC | 1 cut(s) | 123 |
| BssT1I | CCWWGG | 2 cut(s) | 986, 1064 |
| Bst1107I | GTATAC | 1 cut(s) | 123 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| Bst6I | CTCTTC | 2 cut(s) | 696, 1101 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 971, 1049 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstNSI | RCATGY | 1 cut(s) | 912 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstSLI | GKGCMC | 1 cut(s) | 283 |
| BstV1I | GCAGC | 4 cut(s) | 349, 877, 961, 1039 |
| BstZ17I | GTATAC | 1 cut(s) | 123 |
| BsuI | GTATCC | 1 cut(s) | 116 |
| BveI | ACCTGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 1 cut(s) | 76 |
| CviAII | CATG | 4 cut(s) | 491, 812, 817, 909 |
| CviQI | GTAC | 1 cut(s) | 76 |
| Eam1104I | CTCTTC | 2 cut(s) | 696, 1101 |
| EarI | CTCTTC | 2 cut(s) | 696, 1101 |
| Ecl136II | GAGCTC | 1 cut(s) | 1111 |
| Eco130I | CCWWGG | 2 cut(s) | 986, 1064 |
| Eco24I | GRGCYC | 1 cut(s) | 1113 |
| Eco53kI | GAGCTC | 1 cut(s) | 1111 |
| EcoICRI | GAGCTC | 1 cut(s) | 1111 |
| EcoRI | GAATTC | 3 cut(s) | 115, 235, 328 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 2 cut(s) | 986, 1064 |
| EcoT38I | GRGCYC | 1 cut(s) | 1113 |
| ErhI | CCWWGG | 2 cut(s) | 986, 1064 |
| FaeI | CATG | 4 cut(s) | 494, 815, 820, 912 |
| FatI | CATG | 4 cut(s) | 490, 811, 816, 908 |
| FauI | CCCGC | 1 cut(s) | 30 |
| FblI | GTMKAC | 1 cut(s) | 122 |
| Fnu4HI | GCNGC | 4 cut(s) | 363, 891, 975, 1053 |
| FriOI | GRGCYC | 1 cut(s) | 1113 |
| Fsp4HI | GCNGC | 4 cut(s) | 363, 891, 975, 1053 |
| FspBI | CTAG | 1 cut(s) | 548 |
| GluI | GCNGC | 4 cut(s) | 363, 891, 975, 1053 |
| Hin1II | CATG | 4 cut(s) | 494, 815, 820, 912 |
| HinfI | GANTC | 3 cut(s) | 53, 821, 934 |
| HphI | GGTGA | 2 cut(s) | 188, 244 |
| Hpy166II | GTNNAC | 6 cut(s) | 76, 123, 203, 281, 418, 630 |
| Hpy188I | TCNGA | 3 cut(s) | 243, 670, 1115 |
| Hpy188III | TCNNGA | 3 cut(s) | 259, 548, 656 |
| Hpy8I | GTNNAC | 6 cut(s) | 76, 123, 203, 281, 418, 630 |
| HpyAV | CCTTC | 5 cut(s) | 62, 167, 280, 364, 653 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4IV | ACGT | 1 cut(s) | 994 |
| HpyCH4V | TGCA | 7 cut(s) | 10, 94, 281, 473, 584, 965, 1043 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 971, 1049 |
| HpySE526I | ACGT | 1 cut(s) | 994 |
| Hsp92II | CATG | 4 cut(s) | 494, 815, 820, 912 |
| LguI | GCTCTTC | 1 cut(s) | 1101 |
| LmnI | GCTCC | 2 cut(s) | 862, 1036 |
| Lsp1109I | GCAGC | 4 cut(s) | 349, 877, 961, 1039 |
| LweI | GCATC | 2 cut(s) | 81, 571 |
| MaeI | CTAG | 1 cut(s) | 548 |
| MaeII | ACGT | 1 cut(s) | 994 |
| MaeIII | GTNAC | 1 cut(s) | 305 |
| MboII | GAAGA | 8 cut(s) | 62, 100, 279, 613, 713, 847, 937, 1099 |
| MhlI | GDGCHC | 2 cut(s) | 283, 1113 |
| MluCI | AATT | 8 cut(s) | 115, 235, 270, 299, 328, 585, 706, 1014 |
| MlyI | GAGTC | 1 cut(s) | 815 |
| MnlI | CCTC | 2 cut(s) | 27, 373 |
| MseI | TTAA | 2 cut(s) | 23, 168 |
| MslI | CAYNNNNRTG | 1 cut(s) | 495 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 971, 1049 |
| NlaIII | CATG | 4 cut(s) | 494, 815, 820, 912 |
| NmuCI | GTSAC | 1 cut(s) | 305 |
| NspI | RCATGY | 1 cut(s) | 912 |
| PciI | ACATGT | 1 cut(s) | 908 |
| PciSI | GCTCTTC | 1 cut(s) | 1101 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 632 |
| PfeI | GAWTC | 2 cut(s) | 53, 934 |
| PkrI | GCNGC | 4 cut(s) | 364, 892, 976, 1054 |
| PleI | GAGTC | 1 cut(s) | 815 |
| PpsI | GAGTC | 1 cut(s) | 815 |
| PscI | ACATGT | 1 cut(s) | 908 |
| Psp124BI | GAGCTC | 1 cut(s) | 1113 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| RsaI | GTAC | 1 cut(s) | 77 |
| RsaNI | GTAC | 1 cut(s) | 76 |
| RseI | CAYNNNNRTG | 1 cut(s) | 495 |
| SacI | GAGCTC | 1 cut(s) | 1113 |
| SapI | GCTCTTC | 1 cut(s) | 1101 |
| SaqAI | TTAA | 2 cut(s) | 23, 168 |
| SatI | GCNGC | 4 cut(s) | 363, 891, 975, 1053 |
| SchI | GAGTC | 1 cut(s) | 815 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SduI | GDGCHC | 2 cut(s) | 283, 1113 |
| SfaNI | GCATC | 2 cut(s) | 81, 571 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 495 |
| Sse9I | AATT | 8 cut(s) | 115, 235, 270, 299, 328, 585, 706, 1014 |
| SsiI | CCGC | 2 cut(s) | 37, 365 |
| SspMI | CTAG | 1 cut(s) | 548 |
| SstI | GAGCTC | 1 cut(s) | 1113 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| StyI | CCWWGG | 2 cut(s) | 986, 1064 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaiI | ACGT | 1 cut(s) | 997 |
| TaqI | TCGA | 5 cut(s) | 589, 635, 681, 770, 824 |
| TaqII | GACCGA | 1 cut(s) | 324 |
| TasI | AATT | 8 cut(s) | 115, 235, 270, 299, 328, 585, 706, 1014 |
| TatI | WGTACW | 1 cut(s) | 75 |
| TfiI | GAWTC | 2 cut(s) | 53, 934 |
| Tru1I | TTAA | 2 cut(s) | 23, 168 |
| Tru9I | TTAA | 2 cut(s) | 23, 168 |
| TseFI | GTSAC | 1 cut(s) | 305 |
| TseI | GCWGC | 4 cut(s) | 362, 890, 974, 1052 |
| Tsp45I | GTSAC | 1 cut(s) | 305 |
| TspDTI | ATGAA | 6 cut(s) | 63, 312, 479, 900, 984, 1062 |
| TspGWI | ACGGA | 1 cut(s) | 298 |
| VneI | GTGCAC | 1 cut(s) | 279 |
| XapI | RAATTY | 3 cut(s) | 115, 235, 328 |
| XbaI | TCTAGA | 1 cut(s) | 547 |
| XceI | RCATGY | 1 cut(s) | 912 |
| XmiI | GTMKAC | 1 cut(s) | 122 |
| XspI | CTAG | 1 cut(s) | 548 |