Rmu_sc0020342.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020342.1
OG0031128
Physical Location & Seq
Forward (+)
1482 .. 3231
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020342.1_g000003.1.cds

Sequence Viewer

Length: 348 bp
atggtgtggcgcggtgttgtgcgctgtggcagtggtgtggagctctgtggcagctatgtggtgcaatgtggcagcggtttggcacagtgtggcaacaacatggcaatgagcaatggcgcatgggatggtggcgcgatggtgggacgcggcgaagcacaacaagaagaaggaggccaatgcgtcaaccagattggagccaaggtctgggaggttgtctacgccaagcttgacattgaccccaccgaacataacaccaatgactccagctccaaattcagagagtcaacatctactacaacaaagccagcggcggaaggtatggtccacgtgtcgtcatcttggatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.13

Weight (kDa)

5.0

Isoelectric Point (pI)

24.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031128)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001393.1_g000007 Rmu_sc0020342.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 204
AccI GTMKAC 1 cut(s) 216
AccII CGCG 3 cut(s) 12, 134, 147
AciI CCGC 5 cut(s) 12, 75, 147, 308, 311
AcsI RAATTY 1 cut(s) 272
AcvI CACGTG 1 cut(s) 328
AdeI CACNNNGTG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 204
AflIII ACRYGT 1 cut(s) 327
AluBI AGCT 4 cut(s) 43, 54, 226, 267
AluI AGCT 4 cut(s) 43, 54, 226, 267
Alw21I GWGCWC 1 cut(s) 45
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 51, 72
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 4 cut(s) 12, 24, 119, 134
AspS9I GGNCC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 45
BbrPI CACGTG 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 63, 84
BccI CCATC 2 cut(s) 119, 130
BisI GCNGC 4 cut(s) 52, 73, 148, 309
BlsI GCNGC 4 cut(s) 53, 74, 149, 310
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse3DI GCAATG 3 cut(s) 71, 111, 118
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 3 cut(s) 71, 111, 118
BseXI GCAGC 2 cut(s) 63, 84
Bsh1236I CGCG 3 cut(s) 12, 134, 147
BshFI GGCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 5 cut(s) 12, 75, 147, 308, 311
BspANI GGCC 1 cut(s) 174
BspFNI CGCG 3 cut(s) 12, 134, 147
BspLI GGNNCC 1 cut(s) 196
BsrDI GCAATG 3 cut(s) 71, 111, 118
BssECI CCNNGG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 306
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 3 cut(s) 12, 134, 147
BstHHI GCGC 4 cut(s) 12, 24, 119, 134
BstUI CGCG 3 cut(s) 12, 134, 147
BstV1I GCAGC 2 cut(s) 63, 84
BsuRI GGCC 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 37, 92
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 4 cut(s) 12, 24, 119, 134
Cfr13I GGNCC 1 cut(s) 322
CseI GACGC 2 cut(s) 153, 169
CviAII CATG 2 cut(s) 100, 120
CviJI RGCY 7 cut(s) 43, 54, 174, 197, 226, 267, 304
CviKI_1 RGCY 7 cut(s) 43, 54, 174, 197, 226, 267, 304
DraIII CACNNNGTG 1 cut(s) 89
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 43
Eco72I CACGTG 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 103, 123
FaiI YATR 6 cut(s) 57, 101, 121, 249, 320, 346
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 99, 119
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 52, 73, 148, 309
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 4 cut(s) 52, 73, 148, 309
GlaI GCGC 4 cut(s) 11, 23, 118, 133
GluI GCNGC 4 cut(s) 52, 73, 148, 309
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 174
HgaI GACGC 2 cut(s) 153, 169
HhaI GCGC 4 cut(s) 12, 24, 119, 134
Hin1II CATG 2 cut(s) 103, 123
Hin6I GCGC 4 cut(s) 10, 22, 117, 132
HinP1I GCGC 4 cut(s) 10, 22, 117, 132
HincII GTYRAC 2 cut(s) 184, 285
HindII GTYRAC 2 cut(s) 184, 285
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 260, 281
Hpy166II GTNNAC 4 cut(s) 184, 217, 285, 325
Hpy188I TCNGA 1 cut(s) 278
Hpy8I GTNNAC 4 cut(s) 184, 217, 285, 325
HpyAV CCTTC 2 cut(s) 161, 308
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 103, 123
HspAI GCGC 4 cut(s) 10, 22, 117, 132
LmnI GCTCC 3 cut(s) 40, 194, 272
LpnPI CCDG 4 cut(s) 190, 200, 277, 318
Lsp1109I GCAGC 2 cut(s) 63, 84
MaeII ACGT 1 cut(s) 327
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 272
MlyI GAGTC 2 cut(s) 254, 290
MnlI CCTC 2 cut(s) 164, 202
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 75, 308
MvnI CGCG 3 cut(s) 12, 134, 147
NlaIII CATG 2 cut(s) 103, 123
NlaIV GGNNCC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 204
PkrI GCNGC 4 cut(s) 53, 74, 149, 310
PleI GAGTC 2 cut(s) 254, 289
PmaCI CACGTG 1 cut(s) 328
PmlI CACGTG 1 cut(s) 328
PpsI GAGTC 2 cut(s) 254, 289
Ppu21I YACGTR 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 45
PspCI CACGTG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 45
SatI GCNGC 4 cut(s) 52, 73, 148, 309
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 2 cut(s) 254, 290
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 45, 56, 204, 213, 228, 269, 319, 330
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 1 cut(s) 272
SsiI CCGC 5 cut(s) 12, 75, 147, 308, 311
SstI GAGCTC 1 cut(s) 45
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 330
TasI AATT 1 cut(s) 272
TauI GCSGC 2 cut(s) 150, 311
TscAI CASTG 2 cut(s) 37, 92
TseI GCWGC 2 cut(s) 51, 72
TspRI CASTG 2 cut(s) 37, 92
Van91I CCANNNNNTGG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.