Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020463.1

Orthogroup ID

OG0029664

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 485

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020463.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgtccaagcagcccaagcagacctacagagtgtgcttctgcttccggcggcgcttccgcctcgcggtatcggaggctccgccggagatcaagaccctgtttgaccagcactccgagaatggcgtcatgaccctcgatcacttccaccgcttcctgaccgaggtccagaaggaggacctgaccaaggaggaggcccaggtcttactggatcagagcctcaacgacttcaagcacctcaatatcttccaccgcaagattctcaacctcgaggccttcttcaagttcctcttcagtgacaataacccccctatcaacaacaataaggtgcaccatgatatgaatgcgcctttgtcgcattattacatacacaccggacataattcctatttgaccggaaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007049 GO:0007275 GO:0008081 GO:0008150 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0034293 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0098542 GO:0099402 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933

Pfam Domains

Protein Families

C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

133

Amino Acids

15.8

Weight (kDa)

7.89

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029664)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370221
rosa_multiflora	Rmu_sc0020463.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	266
AccII	CGCG	1 cut(s)	65
AciI	CCGC	6 cut(s)	49, 58, 65, 80, 148, 250
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	4 cut(s)	64, 160, 172, 184
AgsI	TTSAA	2 cut(s)	229, 280
AjnI	CCWGG	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	192, 270
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	54, 346
AspS9I	GGNCC	3 cut(s)	163, 175, 193
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	163, 175
BaeGI	GKGCMC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	2 cut(s)	11, 50
BlsI	GCNGC	2 cut(s)	12, 51
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	163, 175
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	163, 175, 193
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	197
BoxI	GACNNNNGTC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	159, 183, 195
BsaWI	WCCGGW	2 cut(s)	371, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 160, 172, 184
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	159, 183, 195
BseLI	CCNNNNNNNGG	4 cut(s)	64, 160, 172, 184
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	194, 272
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	4 cut(s)	46, 83, 372, 393
BslI	CCNNNNNNNGG	4 cut(s)	64, 160, 172, 184
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	194, 272
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	87, 136, 208
BspACI	CCGC	6 cut(s)	49, 58, 65, 80, 148, 250
BspANI	GGCC	2 cut(s)	194, 272
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	159, 183, 195
BssMI	GATC	3 cut(s)	87, 136, 208
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	123
BstENI	CCTNNNNNAGG	2 cut(s)	158, 182
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 346
BstKTI	GATC	3 cut(s)	90, 139, 211
BstMBI	GATC	3 cut(s)	87, 136, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 352
BstNI	CCWGG	1 cut(s)	197
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	194, 272
BtsIMutI	CAGTG	1 cut(s)	298
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	2 cut(s)	54, 346
Cfr13I	GGNCC	3 cut(s)	163, 175, 193
CseI	GACGC	1 cut(s)	112
CviAII	CATG	2 cut(s)	127, 332
CviJI	RGCY	5 cut(s)	13, 77, 194, 216, 272
CviKI_1	RGCY	5 cut(s)	13, 77, 194, 216, 272
DpnI	GATC	3 cut(s)	89, 138, 210
DpnII	GATC	3 cut(s)	87, 136, 208
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	2 cut(s)	47, 69
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	163, 175
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	2 cut(s)	158, 182
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	130, 335
FaiI	YATR	5 cut(s)	128, 333, 338, 365, 378
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	2 cut(s)	126, 331
Fnu4HI	GCNGC	2 cut(s)	11, 50
Fsp4HI	GCNGC	2 cut(s)	11, 50
GlaI	GCGC	2 cut(s)	53, 345
GluI	GCNGC	2 cut(s)	11, 50
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	194, 272
HapII	CCGG	4 cut(s)	46, 83, 372, 393
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	54, 346
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	130, 335
Hin6I	GCGC	2 cut(s)	52, 344
HinP1I	GCGC	2 cut(s)	52, 344
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	4 cut(s)	46, 83, 372, 393
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	73, 115, 213
Hpy188III	TCNNGA	4 cut(s)	91, 127, 154, 166
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	163, 283
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 352
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	130, 335
HspAI	GCGC	2 cut(s)	52, 344
Kzo9I	GATC	3 cut(s)	87, 136, 208
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	89, 138, 210
MboI	GATC	3 cut(s)	87, 136, 208
MboII	GAAGA	3 cut(s)	235, 268, 280
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	379
MspI	CCGG	4 cut(s)	46, 83, 372, 393
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	16, 352
NdeII	GATC	3 cut(s)	87, 136, 208
NlaIII	CATG	2 cut(s)	130, 335
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	266
PagI	TCATGA	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	272
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	12, 51
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	3 cut(s)	163, 175, 193
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	266
SatI	GCNGC	2 cut(s)	11, 50
Sau3AI	GATC	3 cut(s)	87, 136, 208
Sau96I	GGNCC	3 cut(s)	163, 175, 193
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	26, 165, 180, 201, 237, 267, 327
SfcI	CTRYAG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	163, 175
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	379
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	6 cut(s)	49, 58, 65, 80, 148, 250
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	2 cut(s)	135, 267
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	379
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	163, 175
XagI	CCTNNNNNAGG	2 cut(s)	158, 182
XhoI	CTCGAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.