Rmu_sc0021508.1_g000001

sphingolipid transporter spinster homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021508.1
Physical Location & Seq
Reverse (-)
1 .. 690
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021508.1_g000001.1.cds

Sequence Viewer

Length: 242 bp
atggccaatcctcaacatgaagaagaagaatcaaagtcagtcgtctccattgcctctacctcattaaggaagtcaaggaaatcaaagcgtccttcctggttcacccccaagaggttacttctcatattctgtgtgatcaacttggtaaattatgtggaccgaggagcaatatcaagcaacggcgtgaatgggaaccttgcaatttgcaggaatggtaaatgcaaacctgctaccggcataca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.79

Weight (kDa)

10.04

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025464)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0021508.1_g000001 Rmu_ssc0000381.1_g000032
rosa_roxburghii Rroxscaffold_7G00199190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 3 cut(s) 66, 111, 233
AjnI CCWGG 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 5
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 111, 233
Bse118I RCCGGY 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 3 cut(s) 66, 111, 233
BseMI GCAATG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 66, 111, 233
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 135
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 64
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 77
CviAII CATG 1 cut(s) 17
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 20
FaiI YATR 4 cut(s) 18, 125, 153, 239
FatI CATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 135
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 20
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 102, 157
Hpy8I GTNNAC 2 cut(s) 102, 157
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 200, 207, 222
Hsp92II CATG 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 3 cut(s) 82, 109, 193
MaeIII GTNAC 1 cut(s) 114
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 3 cut(s) 32, 35, 38
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 148, 201
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 21, 64, 70, 105, 155
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 97
SetI ASST 4 cut(s) 62, 116, 198, 229
SinI GGWCC 1 cut(s) 157
Sse9I AATT 2 cut(s) 148, 201
StyD4I CCNGG 1 cut(s) 95
TaqII GACCGA 1 cut(s) 174
TasI AATT 2 cut(s) 148, 201
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.