Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022983.1

Orthogroup ID

OG0031146

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 255

Gene Structure 254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 254 bp

atgtcgacaatccataccttccgagcttcgaaaaccaaagccatcctaaccctcttgcaaggatgcaacaccctcaaaaggctcagaaaaatccacgcccacgtcatcaccaacggtcttcaacaccacccttccatttgcagcaagctcctcaacttctgcgccgtctccgtctcaggcagcttaccctacgctcagctgctcttccattatcacatcccaaacccacaaacccaagactggaattccatgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

9.95

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031146)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001634.1_g000032 Rmu_sc0022983.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	78, 240
AgsI	TTSAA	1 cut(s)	122
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	4 cut(s)	26, 148, 183, 199
AluI	AGCT	4 cut(s)	26, 148, 183, 199
Alw26I	GTCTC	2 cut(s)	172, 178
ApeKI	GCWGC	3 cut(s)	141, 180, 199
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	153, 186, 192
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	172, 178
BisI	GCNGC	3 cut(s)	142, 181, 200
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	3 cut(s)	143, 182, 201
BmgBI	CACGTC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 240
Bse1I	ACTGG	1 cut(s)	245
BseGI	GGATG	3 cut(s)	42, 68, 216
BseLI	CCNNNNNNNGG	2 cut(s)	78, 240
BseMII	CTCAG	3 cut(s)	97, 189, 209
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	153, 186, 192
BslI	CCNNNNNNNGG	2 cut(s)	78, 240
BsmAI	GTCTC	2 cut(s)	172, 178
BsmBI	CGTCTC	2 cut(s)	172, 178
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1720I	GCTNAGC	1 cut(s)	195
BspCNI	CTCAG	3 cut(s)	96, 188, 208
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	83, 175, 195
BstF5I	GGATG	3 cut(s)	42, 68, 216
BstHHI	GCGC	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	172, 178
BstV1I	GCAGC	3 cut(s)	153, 186, 192
BstV2I	GAAGAC	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	42, 68, 216
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	164
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	6 cut(s)	26, 41, 82, 148, 183, 199
CviKI_1	RGCY	6 cut(s)	26, 41, 82, 148, 183, 199
DdeI	CTNAG	3 cut(s)	83, 175, 195
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	244
Esp3I	CGTCTC	2 cut(s)	172, 178
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	15, 251
FatI	CATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	142, 181, 200
FokI	GGATG	3 cut(s)	29, 75, 203
Fsp4HI	GCNGC	3 cut(s)	142, 181, 200
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	142, 181, 200
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	23, 86
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	28, 141
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	58, 66, 141
HpyF3I	CTNAG	3 cut(s)	83, 175, 195
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	2 cut(s)	162, 226
Lsp1109I	GCAGC	3 cut(s)	153, 186, 192
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	102
MboII	GAAGA	2 cut(s)	110, 196
MluCI	AATT	1 cut(s)	244
MnlI	CCTC	3 cut(s)	62, 83, 161
MspA1I	CMGCKG	1 cut(s)	199
NlaIII	CATG	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	143, 182, 201
PvuII	CAGCTG	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	209
SatI	GCNGC	3 cut(s)	142, 181, 200
SetI	ASST	6 cut(s)	20, 28, 105, 150, 185, 201
SfaNI	GCATC	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	29
SgeI	CNNG	8 cut(s)	35, 67, 71, 107, 113, 157, 189, 248
Sse9I	AATT	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	5, 29
TasI	AATT	1 cut(s)	244
TseI	GCWGC	3 cut(s)	141, 180, 199
TspGWI	ACGGA	1 cut(s)	160
XapI	RAATTY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.