Rmu_sc0023110.1_g000004

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023110.1
Physical Location & Seq
Forward (+)
15253 .. 15630
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023110.1_g000004.1.cds

Sequence Viewer

Length: 378 bp
atgcttaccccatcaactctatataaagcttatcttgtgtacaagtttactgaaagtgcatggggatttgacaactatcctgtggtggtggcggtttctgcaagggattatggctttgattatgaaagccctagtttgagagaaattgttgatggaggagacctaaagcacactgcctttctggtgcatcccgagagaggaatcagtgatgatcagcattttccaaaggaaacagcagagggctggttgctaggtgaatttttctgtggtggaggagaagatggagagttggagatgatttgttgtgagattgatattagcagcaagagtggcatcattgtgcaagggattgagatcagaccgtgcgataggaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

13.96

Weight (kDa)

4.44

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0031377)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006757.1_g000003 Rmu_sc0023110.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 333
BccI CCATC 3 cut(s) 19, 146, 275
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 3 cut(s) 132, 251, 376
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 191
BmsI GCATC 2 cut(s) 196, 342
BsaBI GATNNNNATC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 353
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 171, 288
BseXI GCAGC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 191
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 2 cut(s) 211, 354
BspACI CCGC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 39
BssMI GATC 2 cut(s) 211, 354
Bst4CI ACNGT 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 39
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 214, 357
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 2 cut(s) 211, 354
BstMWI GCNNNNNNNGC 2 cut(s) 98, 330
BstV1I GCAGC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 211
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 60
CviJI RGCY 4 cut(s) 29, 114, 129, 243
CviKI_1 RGCY 4 cut(s) 29, 114, 129, 243
CviQI GTAC 1 cut(s) 40
DpnI GATC 2 cut(s) 213, 356
DpnII GATC 2 cut(s) 211, 354
Eco31I GGTCTC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 191
FaeI CATG 1 cut(s) 63
FaiI YATR 5 cut(s) 22, 24, 61, 111, 123
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 322
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 322
FspBI CTAG 3 cut(s) 132, 251, 376
GluI GCNGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 201
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 40, 48
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 40, 48
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4V TGCA 4 cut(s) 59, 101, 187, 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 330
Hsp92II CATG 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 354
LpnPI CCDG 3 cut(s) 93, 167, 229
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 2 cut(s) 196, 342
MaeI CTAG 3 cut(s) 132, 251, 376
MalI GATC 2 cut(s) 213, 356
MboI GATC 2 cut(s) 211, 354
MboII GAAGA 1 cut(s) 290
MluCI AATT 2 cut(s) 144, 257
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 4 cut(s) 149, 191, 232, 266
MslI CAYNNNNRTG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 98, 330
NdeII GATC 2 cut(s) 211, 354
NlaIII CATG 1 cut(s) 63
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 323
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 338
SatI GCNGC 1 cut(s) 322
Sau3AI GATC 2 cut(s) 211, 354
SetI ASST 3 cut(s) 31, 165, 256
SfaNI GCATC 2 cut(s) 196, 342
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 2 cut(s) 144, 257
SsiI CCGC 1 cut(s) 92
SspMI CTAG 3 cut(s) 132, 251, 376
TaaI ACNGT 1 cut(s) 363
TasI AATT 2 cut(s) 144, 257
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 201
TscAI CASTG 2 cut(s) 178, 211
TseI GCWGC 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 2 cut(s) 178, 211
XapI RAATTY 1 cut(s) 257
XspI CTAG 3 cut(s) 132, 251, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.