Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024606.1

Orthogroup ID

OG0029269

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1080

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024606.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 760 bp

atattctattgaacacattagaacaaaaagggttgcagttctattgggccagatctggaagtggtgtagcattgtcattaagagttctgcactgttgtcaatatggatttttgtcattccagtattgatcgggttgctctttgagcttttggtgattgtgccgatgcgggtgcctgttgatgaaagcccagtattcctgctgtatcaggactgggctttaggccttatttttctcaagatatggacaagattggtgatgttggatcacatgatgccattggtagatgaaagctggcgcgtaaagtttgaaagggtgagggaagatggcttctccaggctgcaaggtctttgggtgctccgggagattgtattcccaatcataatgaagttgttgactgccctgtgtgtgccttatgtacttgcaagagggttatttcctgtgctcggttacccattagtagtcaactcagcagtgtatcggtttgcctggataggatgcctgtgctttagtctgctgtgcttctgtgccaagaggttccatgtatggttcaccaaccttcacaactctatacgtgatgaccgatatctaattggtcgtaggcttcataactttggagaagatgttgtagagaagcaaaatgaggcagggacatcctctgaattgcaggactctagttttgaagccagtggtttaattcctcatgaccgagaggctgacgatggtctccgtcaaaggcgtgctatccaacataatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006720 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009698 GO:0009699 GO:0009893 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010243 GO:0010345 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030176 GO:0030433 GO:0031224 GO:0031227 GO:0031624 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042175 GO:0042221 GO:0042335 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0048518 GO:0048856 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0051603 GO:0051716 GO:0065007 GO:0065009 GO:0070647 GO:0070936 GO:0071704 GO:0098827 GO:0140096 GO:1900490 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901568 GO:1901570 GO:1901575 GO:1901576 GO:1901698 GO:1901700 GO:1990381 GO:2001215

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

RINGv

Protein Analysis

252

Amino Acids

29.26

Weight (kDa)

8.56

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029269)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g08420
rosa_multiflora	Rmu_sc0024606.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	298
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	271
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	12, 309, 681
AjnI	CCWGG	2 cut(s)	333, 486
AluBI	AGCT	2 cut(s)	146, 292
AluI	AGCT	2 cut(s)	146, 292
Alw21I	GWGCWC	2 cut(s)	358, 445
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	47, 221
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	4 cut(s)	164, 266, 326, 542
BanI	GGYRCC	1 cut(s)	170
Bbv12I	GWGCWC	2 cut(s)	358, 445
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	318, 714
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	2 cut(s)	335, 488
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	1 cut(s)	673
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	335, 360, 488
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	172, 537
BmrFI	CCNGG	3 cut(s)	335, 360, 488
BmrI	ACTGGG	2 cut(s)	183, 221
BmsI	GCATC	3 cut(s)	154, 262, 486
BmuI	ACTGGG	2 cut(s)	183, 221
BoxI	GACNNNNGTC	1 cut(s)	721
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	4 cut(s)	120, 189, 216, 685
BseBI	CCWGG	2 cut(s)	335, 488
BseGI	GGATG	2 cut(s)	501, 651
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	481
BseNI	ACTGG	4 cut(s)	120, 189, 216, 685
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	49, 223
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	358, 445
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	49, 223
Bso31I	GGTCTC	1 cut(s)	729
Bsp1286I	GDGCHC	2 cut(s)	358, 445
Bsp143I	GATC	3 cut(s)	52, 127, 263
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	49, 223
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	701
BspLI	GGNNCC	2 cut(s)	172, 537
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	729
BsrI	ACTGG	4 cut(s)	120, 189, 216, 685
BssMI	GATC	3 cut(s)	52, 127, 263
Bst2UI	CCWGG	2 cut(s)	335, 488
Bst4CI	ACNGT	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	294, 739
BstDEI	CTNAG	2 cut(s)	467, 757
BstEII	GGTNACC	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	501, 651
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	3 cut(s)	55, 130, 266
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	3 cut(s)	52, 127, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	335, 488
BstPAI	GACNNNNGTC	1 cut(s)	721
BstPI	GGTNACC	1 cut(s)	447
BstSCI	CCNGG	3 cut(s)	333, 358, 486
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	49, 223
BtsCI	GGATG	2 cut(s)	501, 651
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	90, 478, 692
Cac8I	GCNNGC	2 cut(s)	294, 739
CciI	TCATGA	1 cut(s)	701
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	3 cut(s)	269, 540, 702
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	467, 757
DpnI	GATC	3 cut(s)	54, 129, 265
DpnII	GATC	3 cut(s)	52, 127, 263
Eco147I	AGGCCT	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	729
Eco32I	GATATC	1 cut(s)	585
Eco91I	GGTNACC	1 cut(s)	447
EcoO65I	GGTNACC	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	333, 486
EcoRV	GATATC	1 cut(s)	585
FaeI	CATG	3 cut(s)	272, 543, 705
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	3 cut(s)	268, 539, 701
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	2 cut(s)	508, 638
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	673
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	49, 223
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	272, 543, 705
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	2 cut(s)	394, 464
HindII	GTYRAC	2 cut(s)	394, 464
HinfI	GANTC	1 cut(s)	669
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	4 cut(s)	164, 266, 326, 542
Hpy166II	GTNNAC	3 cut(s)	394, 464, 550
Hpy188I	TCNGA	1 cut(s)	659
Hpy188III	TCNNGA	4 cut(s)	56, 207, 236, 702
Hpy8I	GTNNAC	3 cut(s)	394, 464, 550
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	36, 90, 341, 423, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	467, 757
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	3 cut(s)	272, 543, 705
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	3 cut(s)	52, 127, 263
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	3 cut(s)	154, 262, 486
MaeI	CTAG	1 cut(s)	673
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	3 cut(s)	54, 129, 265
MboI	GATC	3 cut(s)	52, 127, 263
MboII	GAAGA	2 cut(s)	333, 630
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	358, 445
MluCI	AATT	3 cut(s)	589, 660, 694
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	310, 420, 526, 635, 665, 704, 709
MseI	TTAA	2 cut(s)	79, 693
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	3 cut(s)	335, 360, 488
MvaI	CCWGG	2 cut(s)	335, 488
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	52, 127, 263
NlaIII	CATG	3 cut(s)	272, 543, 705
NlaIV	GGNNCC	2 cut(s)	172, 537
PagI	TCATGA	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
Ppu21I	YACGTR	1 cut(s)	573
PshAI	GACNNNNGTC	1 cut(s)	721
Psp6I	CCWGG	2 cut(s)	333, 486
PspEI	GGTNACC	1 cut(s)	447
PspGI	CCWGG	2 cut(s)	333, 486
PspN4I	GGNNCC	2 cut(s)	172, 537
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	79, 693
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	3 cut(s)	52, 127, 263
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	3 cut(s)	335, 360, 488
SduI	GDGCHC	2 cut(s)	358, 445
SetI	ASST	6 cut(s)	148, 294, 347, 537, 559, 575
SfaNI	GCATC	3 cut(s)	154, 262, 486
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	589, 660, 694
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	673
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	333, 358, 486
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	575
TaqII	GACCGA	2 cut(s)	595, 721
TasI	AATT	3 cut(s)	589, 660, 694
TatI	WGTACW	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	79, 693
Tru9I	TTAA	2 cut(s)	79, 693
TscAI	CASTG	3 cut(s)	97, 478, 692
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	196, 301, 399, 594
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	3 cut(s)	97, 478, 692
XspI	CTAG	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.