Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025219.1

Orthogroup ID

OG0025459

Physical Location & Seq

Genomic Coordinates Forward (+)

6265 .. 6912

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025219.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggctcatgaagaggcaagaaacttagactctgagaagcaaaggcttctcagtcagcacaaagagaagcacttcaccgccggcgagatcgtccgtgacatcatcatcggcgtatctgatggcctcaccgtccccttcgctctcgctgccggtctctccggtgcaaatgccacgtcctcgattgtcctaaccgctggagtcgccgaagtcgccgccggcgccatctccatgggacttggcggatatcttgcggcgaaaagcgaagcggatcactatgtgagggagttaaggagagaacaagaagaaatagtcaatgtcccggatacagaagcggcagaggtagcagagattcttgcagagtatggaatagagcaccatgaatatacaccagttgtgaatgccctgaggaagaacccacaagcttggcttgatttcatgatgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

148

Amino Acids

16.04

Weight (kDa)

4.98

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025459)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025219.1_g000003 Rmu_sc0031013.1_g000001 Rmu_ssc0000204.1_g000038

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	7 cut(s)	78, 192, 213, 240, 251, 266, 332
AclWI	GGATC	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	174
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	67, 118
AxyI	CCTNAGG	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	113, 230
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	4 cut(s)	147, 213, 252, 333
BlsI	GCNGC	4 cut(s)	148, 214, 253, 334
Bme1390I	CCNGG	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	158
Bse118I	RCCGGY	3 cut(s)	80, 149, 215
Bse1I	ACTGG	1 cut(s)	389
Bse21I	CCTNAGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	24, 64, 395
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	5 cut(s)	81, 150, 159, 216, 320
BslFI	GGGAC	3 cut(s)	116, 246, 302
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	116, 246, 302
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	87, 268
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	7 cut(s)	78, 192, 213, 240, 251, 266, 332
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	3 cut(s)	25, 63, 396
BspHI	TCATGA	2 cut(s)	7, 435
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	3 cut(s)	80, 149, 215
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	3 cut(s)	80, 149, 215
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	87, 268
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	82, 217
BstDEI	CTNAG	4 cut(s)	25, 33, 50, 404
BstDSI	CCRYGG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	90, 271
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	87, 268
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 200, 209, 218, 341
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	133
BstXI	CCANNNNNNTGG	2 cut(s)	229, 423
Bsu36I	CCTNAGG	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	82, 217
CciI	TCATGA	2 cut(s)	7, 435
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	3 cut(s)	80, 149, 215
CviAII	CATG	4 cut(s)	8, 229, 377, 436
CviJI	RGCY	5 cut(s)	5, 46, 123, 422, 427
CviKI_1	RGCY	5 cut(s)	5, 46, 123, 422, 427
DdeI	CTNAG	4 cut(s)	25, 33, 50, 404
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	2 cut(s)	89, 270
DpnII	GATC	2 cut(s)	87, 268
DraIII	CACNNNGTG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	4 cut(s)	11, 232, 380, 439
FaiI	YATR	7 cut(s)	9, 230, 276, 363, 378, 384, 437
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	3 cut(s)	116, 246, 302
FatI	CATG	4 cut(s)	7, 228, 376, 435
Fnu4HI	GCNGC	4 cut(s)	147, 213, 252, 333
Fsp4HI	GCNGC	4 cut(s)	147, 213, 252, 333
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	4 cut(s)	147, 213, 252, 333
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	5 cut(s)	81, 150, 159, 216, 320
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	11, 232, 380, 439
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	3 cut(s)	29, 198, 349
HpaII	CCGG	5 cut(s)	81, 150, 159, 216, 320
HphI	GGTGA	2 cut(s)	67, 118
Hpy188I	TCNGA	2 cut(s)	34, 118
Hpy188III	TCNNGA	2 cut(s)	8, 436
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	164, 356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 200, 209, 218, 341
HpyF3I	CTNAG	4 cut(s)	25, 33, 50, 404
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	11, 232, 380, 439
HspAI	GCGC	1 cut(s)	219
KasI	GGCGCC	1 cut(s)	218
KroI	GCCGGC	2 cut(s)	80, 215
KroNI	GCCGGC	2 cut(s)	82, 217
Kzo9I	GATC	2 cut(s)	87, 268
LpnPI	CCDG	8 cut(s)	94, 163, 172, 180, 229, 333, 402, 416
Lsp1109I	GCAGC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	89, 270
MboI	GATC	2 cut(s)	87, 268
MboII	GAAGA	3 cut(s)	23, 314, 421
MhlI	GDGCHC	1 cut(s)	375
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	23, 207
MnlI	CCTC	6 cut(s)	7, 134, 187, 273, 331, 399
MreI	CGCCGGCG	2 cut(s)	80, 215
MroNI	GCCGGC	2 cut(s)	80, 215
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	5 cut(s)	81, 150, 159, 216, 320
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	5 cut(s)	146, 200, 209, 218, 341
NaeI	GCCGGC	2 cut(s)	82, 217
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	87, 268
NgoMIV	GCCGGC	2 cut(s)	80, 215
NlaIII	CATG	4 cut(s)	11, 232, 380, 439
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	95
PagI	TCATGA	2 cut(s)	7, 435
PctI	GAATGC	1 cut(s)	403
PdiI	GCCGGC	2 cut(s)	82, 217
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	148, 214, 253, 334
PleI	GAGTC	2 cut(s)	23, 206
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	2 cut(s)	23, 206
PspN4I	GGNNCC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	147, 213, 252, 333
Sau3AI	GATC	2 cut(s)	87, 268
SchI	GAGTC	2 cut(s)	23, 207
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	3 cut(s)	176, 342, 424
SfoI	GGCGCC	1 cut(s)	220
SgrAI	CRCCGGYG	2 cut(s)	80, 215
SmiMI	CAYNNNNRTG	1 cut(s)	227
SsiI	CCGC	7 cut(s)	78, 192, 213, 240, 251, 266, 332
SspDI	GGCGCC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	179
TauI	GCSGC	3 cut(s)	215, 254, 335
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	24, 393, 424
TspGWI	ACGGA	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.