Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027411.1

Orthogroup ID

OG0031089

Physical Location & Seq

Genomic Coordinates Reverse (-)

10365 .. 13926

Gene Structure 3562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027411.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggagacaacacccgacctgaaattgaaatctccgatgaagaaacggctgaagaaggtggcgttggaggaagagccgcagttgaggagccagtcgtctgagagagtgaaggaggcgataatgaccccgggatggggatggccccatcccggacccgccccattgccatccctacttgtacagaagacgattactttccgaccggggacgagaaaggaaagaaaaaaacctcagacgatccagaattgtgttgttggagacacccaggagctagaaaaagggggccgacgatatcactgtcggagcagtgcacagacatcaaaaagacaagctttgaattatcttcagcaaagccttgttatttgggcaaggcccctgcttaaagcaaacgacctcaaggagcttgttaatccttatattggtattggtgacaactatgacagcacagagctggatcatatggtgtggactgcatctttatgcatagaacagtctcctattctacatcccctcatgagtcaggttgaggtactggaggtggagcttcacctggtgaaggaggtttcggtccgatcaaactccttctttgaggctcagagccagttggaggatttgaatgtgaagatcgttgaggtatgcaatcggattcaggagcttaaggagaccattttgctgttggatgtggatttggtggactctgcgaggcagattcaggagctcaatgttaccaggagtaatttgttggctcttcaacagaagctgaggctgattctctatgtcaatcaagctctttcggttctcaaactggtattccattgcactttatctcttcggtttagtaatacatatcgattcttgtatgtttacgactttacgacaattgttagcagtttagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

299

Amino Acids

34.28

Weight (kDa)

8.86

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031089)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000679.1_g000029 Rmu_sc0027411.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 156
AclWI	GGATC	2 cut(s)	232, 462
AcuI	CTGAAG	2 cut(s)	71, 329
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	2 cut(s)	180, 531
AfiI	CCNNNNNNNGG	7 cut(s)	132, 133, 134, 149, 419, 556, 607
AflII	CTTAAG	1 cut(s)	656
AgsI	TTSAA	4 cut(s)	28, 337, 616, 752
AjnI	CCWGG	3 cut(s)	264, 549, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	9 cut(s)	271, 332, 403, 451, 544, 655, 718, 760, 788
AluI	AGCT	9 cut(s)	271, 332, 403, 451, 544, 655, 718, 760, 788
Alw21I	GWGCWC	2 cut(s)	313, 720
Alw26I	GTCTC	3 cut(s)	252, 498, 656
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	232, 462
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	3 cut(s)	140, 283, 371
ApaLI	GTGCAC	1 cut(s)	309
AspS9I	GGNCC	5 cut(s)	141, 152, 283, 372, 568
AsuC2I	CCSGG	4 cut(s)	128, 129, 150, 204
AsuHPI	GGTGA	3 cut(s)	440, 539, 565
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	152, 568
BaeGI	GKGCMC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	313, 720
BbvCI	CCTCAGC	1 cut(s)	761
BccI	CCATC	4 cut(s)	126, 132, 153, 175
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	3 cut(s)	266, 551, 730
BcnI	CCSGG	4 cut(s)	128, 129, 150, 204
BcoDI	GTCTC	3 cut(s)	252, 498, 656
BfaI	CTAG	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	656
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	7 cut(s)	128, 129, 150, 204, 266, 551, 730
Bme18I	GGWCC	2 cut(s)	152, 568
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	5 cut(s)	141, 152, 283, 372, 568
BmiI	GGNNCC	5 cut(s)	89, 143, 154, 284, 374
BmrFI	CCNGG	7 cut(s)	128, 129, 150, 204, 266, 551, 730
BmsI	GCATC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	761
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	4 cut(s)	128, 129, 150, 204
Bsa29I	ATCGAT	1 cut(s)	850
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	4 cut(s)	126, 127, 203, 264
Bsc4I	CCNNNNNNNGG	7 cut(s)	132, 133, 134, 149, 419, 556, 607
Bse1I	ACTGG	4 cut(s)	91, 537, 601, 810
Bse3DI	GCAATG	2 cut(s)	161, 814
BseBI	CCWGG	3 cut(s)	266, 551, 730
BseCI	ATCGAT	1 cut(s)	850
BseDI	CCNNGG	4 cut(s)	126, 127, 203, 264
BseGI	GGATG	6 cut(s)	137, 143, 145, 167, 505, 685
BseLI	CCNNNNNNNGG	7 cut(s)	132, 133, 134, 149, 419, 556, 607
BseMI	GCAATG	2 cut(s)	161, 814
BseMII	CTCAG	4 cut(s)	90, 245, 608, 752
BseNI	ACTGG	4 cut(s)	91, 537, 601, 810
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	142, 285, 373
BshVI	ATCGAT	1 cut(s)	850
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	313, 720
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	128, 150, 203
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	7 cut(s)	132, 133, 134, 149, 419, 556, 607
BsmAI	GTCTC	3 cut(s)	252, 498, 656
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	142, 285, 373
Bso31I	GGTCTC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	313, 720
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	237, 454, 572, 624
BspACI	CCGC	2 cut(s)	77, 156
BspANI	GGCC	3 cut(s)	142, 285, 373
BspCNI	CTCAG	4 cut(s)	91, 244, 607, 753
BspDI	ATCGAT	1 cut(s)	850
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	5 cut(s)	89, 143, 154, 284, 374
BspPI	GGATC	2 cut(s)	232, 462
BspQI	GCTCTTC	2 cut(s)	66, 753
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	656
BsrDI	GCAATG	2 cut(s)	161, 814
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	91, 537, 601, 810
BssECI	CCNNGG	4 cut(s)	126, 127, 203, 264
BssMI	GATC	4 cut(s)	237, 454, 572, 624
Bst2UI	CCWGG	3 cut(s)	266, 551, 730
Bst4CI	ACNGT	2 cut(s)	299, 492
Bst6I	CTCTTC	3 cut(s)	66, 753, 834
BstAFI	CTTAAG	1 cut(s)	656
BstAUI	TGTACA	1 cut(s)	178
BstDEI	CTNAG	4 cut(s)	99, 231, 594, 761
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	6 cut(s)	137, 143, 145, 167, 505, 685
BstKTI	GATC	4 cut(s)	240, 457, 575, 627
BstMAI	GTCTC	3 cut(s)	252, 498, 656
BstMBI	GATC	4 cut(s)	237, 454, 572, 624
BstMCI	CGRYCG	1 cut(s)	203
BstNI	CCWGG	3 cut(s)	266, 551, 730
BstSCI	CCNGG	7 cut(s)	126, 127, 148, 202, 264, 549, 728
BstSLI	GKGCMC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	850
BsuRI	GGCC	3 cut(s)	142, 285, 373
BsuTUI	ATCGAT	1 cut(s)	850
BtsCI	GGATG	6 cut(s)	137, 143, 145, 167, 505, 685
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	295, 313
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	5 cut(s)	141, 152, 283, 372, 568
Cfr9I	CCCGGG	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	850
CpoI	CGGWCCG	1 cut(s)	568
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	179, 530
CspI	CGGWCCG	1 cut(s)	568
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	2 cut(s)	179, 530
DdeI	CTNAG	4 cut(s)	99, 231, 594, 761
DpnI	GATC	4 cut(s)	239, 456, 574, 626
DpnII	GATC	4 cut(s)	237, 454, 572, 624
DraIII	CACNNNGTG	1 cut(s)	553
Eam1104I	CTCTTC	3 cut(s)	66, 753, 834
EarI	CTCTTC	3 cut(s)	66, 753, 834
Ecl136II	GAGCTC	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	656
Eco32I	GATATC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	152, 568
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	71, 329
Eco88I	CYCGRG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	264, 549, 728
EcoRV	GATATC	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	720
FaeI	CATG	1 cut(s)	517
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	1 cut(s)	513
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	6 cut(s)	132, 144, 150, 154, 492, 692
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	142, 285, 373
HapII	CCGG	3 cut(s)	128, 150, 203
Hin1II	CATG	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	6 cut(s)	517, 646, 695, 709, 769, 852
HpaII	CCGG	3 cut(s)	128, 150, 203
HphI	GGTGA	3 cut(s)	440, 539, 565
Hpy166II	GTNNAC	4 cut(s)	311, 468, 694, 865
Hpy188I	TCNGA	8 cut(s)	36, 100, 200, 234, 303, 572, 597, 645
Hpy188III	TCNNGA	4 cut(s)	241, 514, 650, 713
Hpy8I	GTNNAC	4 cut(s)	311, 468, 694, 865
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	4 cut(s)	49, 103, 550, 592
HpyCH4III	ACNGT	2 cut(s)	299, 492
HpyCH4V	TGCA	5 cut(s)	311, 473, 483, 639, 819
HpyF3I	CTNAG	4 cut(s)	99, 231, 594, 761
Hsp92II	CATG	1 cut(s)	517
Kzo9I	GATC	4 cut(s)	237, 454, 572, 624
LguI	GCTCTTC	2 cut(s)	66, 753
LmnI	GCTCC	7 cut(s)	87, 268, 303, 400, 541, 652, 715
LweI	GCATC	1 cut(s)	482
MabI	ACCWGGT	1 cut(s)	549
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	428, 724
MalI	GATC	4 cut(s)	239, 456, 574, 626
MboI	GATC	4 cut(s)	237, 454, 572, 624
MboII	GAAGA	8 cut(s)	52, 64, 83, 196, 335, 634, 740, 821
MfeI	CAATTG	1 cut(s)	879
MhlI	GDGCHC	2 cut(s)	313, 720
MluCI	AATT	5 cut(s)	23, 244, 337, 736, 879
MlyI	GAGTC	2 cut(s)	526, 689
MmeI	TCCRAC	6 cut(s)	45, 223, 235, 281, 585, 657
Mph1103I	ATGCAT	1 cut(s)	485
MseI	TTAA	3 cut(s)	381, 408, 657
MslI	CAYNNNNRTG	1 cut(s)	478
MspCI	CTTAAG	1 cut(s)	656
MspI	CCGG	3 cut(s)	128, 150, 203
MspR9I	CCNGG	7 cut(s)	128, 129, 150, 204, 266, 551, 730
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	3 cut(s)	266, 551, 730
NciI	CCSGG	4 cut(s)	128, 129, 150, 204
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	4 cut(s)	237, 454, 572, 624
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	5 cut(s)	89, 143, 154, 284, 374
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	485
PagI	TCATGA	1 cut(s)	513
PciSI	GCTCTTC	2 cut(s)	66, 753
PfeI	GAWTC	4 cut(s)	646, 709, 769, 852
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	2 cut(s)	525, 689
PpsI	GAGTC	2 cut(s)	525, 689
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	3 cut(s)	264, 549, 728
PspGI	CCWGG	3 cut(s)	264, 549, 728
PspN4I	GGNNCC	5 cut(s)	89, 143, 154, 284, 374
PspPI	GGNCC	5 cut(s)	141, 152, 283, 372, 568
PstNI	CAGNNNCTG	1 cut(s)	760
RsaI	GTAC	2 cut(s)	180, 531
RsaNI	GTAC	2 cut(s)	179, 530
RseI	CAYNNNNRTG	1 cut(s)	478
Rsr2I	CGGWCCG	1 cut(s)	568
RsrII	CGGWCCG	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	720
SapI	GCTCTTC	2 cut(s)	66, 753
SaqAI	TTAA	3 cut(s)	381, 408, 657
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	237, 454, 572, 624
Sau96I	GGNCC	5 cut(s)	141, 152, 283, 372, 568
SchI	GAGTC	2 cut(s)	526, 689
ScrFI	CCNGG	7 cut(s)	128, 129, 150, 204, 266, 551, 730
SduI	GDGCHC	2 cut(s)	313, 720
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	482
SinI	GGWCC	2 cut(s)	152, 568
SmaI	CCCGGG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	2 cut(s)	395, 656
SmoI	CTYRAG	2 cut(s)	395, 656
Sse9I	AATT	5 cut(s)	23, 244, 337, 736, 879
SsiI	CCGC	2 cut(s)	77, 156
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	7 cut(s)	126, 127, 148, 202, 264, 549, 728
TaaI	ACNGT	2 cut(s)	299, 492
TaqI	TCGA	1 cut(s)	850
TaqII	GACCGA	1 cut(s)	556
TasI	AATT	5 cut(s)	23, 244, 337, 736, 879
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	4 cut(s)	646, 709, 769, 852
Tru1I	TTAA	3 cut(s)	381, 408, 657
Tru9I	TTAA	3 cut(s)	381, 408, 657
TscAI	CASTG	2 cut(s)	302, 313
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	127
TspRI	CASTG	2 cut(s)	302, 313
Vha464I	CTTAAG	1 cut(s)	656
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	152, 568
XagI	CCTNNNNNAGG	1 cut(s)	554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmaI	CCCGGG	1 cut(s)	127
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.