Rmu_sc0030009.1_g000001
TCP Family

T-complex protein 1 subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030009.1
Physical Location & Seq
Reverse (-)
2 .. 1113
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030009.1_g000001.1.cds

Sequence Viewer

Length: 1112 bp
atggcttcttcagcagtagccgccccccggtcttcctccaagaccgagtcctacgtcgacaacaagcgcaaggaggacgtccgccaggccaacatcctcgccgcccgcaccgtcgccgacgccgtccgcaccagcctcggccccaaaggcatggacaagatgatctccaccgccaacggtgacgtcatcatcaccaacgacggcgccaccatcctcaacaagatggaggtcctccagcccgccgccaagatgctcgtcgagctctccaagtcccaggacgctgccgccggggacggcaccaccaccgtcgtcgtcatcgccggggctctgctcaagcagtgcctcgtcctcctctcccacggcattcaccccacggtgatctccgactcgctccacaaggtctcgatcaaggccgtcgacgtcctgaccgccatggcccgccccgtggagctctccgaccgggaatcgcttgttaaatcggcgagcactgcgctcaacagcaaggtcgtgagtcagtactcgacgcttctggcgccgttggcggtggatgcagtgctgtcagtggtggaccctgcgaagccggaaattgtggacctgagggacatcaagatcgtgaagaagctcggcggaaccgtcgacgataccgaaaccgttaaggggctggttttcgataagaagacgagccacgctgctggtggtcccacaaggatggagaaggcgaagattgctgtgattcagttccagatttcgcctccgaaaactgatatcgagcagagcatagtggtttcggactatacccagatggataggattttgaaggaggagaggaattacattctcagtatgattaagaagatcaagtcgacgggttgtaatgttctgctgatccagaagagtattttgagggatgcagtgactgatctgtcattgcattacttggccaaagccaagattttggtggttaaggatgtggagagggatgagattgagtttatcaccaagactctgaattgcctgcccattgcgaatatagagcatttccgggaggagaagctggggtatgctgacttggtggaggagtcttcgcttggtgatagcaagattgtgaagat

Protein Analysis

370

Amino Acids

39.95

Weight (kDa)

8.22

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0031484)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0014797.1_g000002 Rmu_sc0030009.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 922
AatII GACGTC 3 cut(s) 81, 186, 423
AccB1I GGYRCC 3 cut(s) 203, 296, 532
AccI GTMKAC 4 cut(s) 57, 417, 636, 863
AclWI GGATC 1 cut(s) 880
AcoI YGGCCR 1 cut(s) 939
AcyI GRCGYC 6 cut(s) 78, 120, 183, 204, 420, 533
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 3 cut(s) 27, 445, 657
AgsI TTSAA 1 cut(s) 817
AjnI CCWGG 2 cut(s) 84, 273
AluBI AGCT 4 cut(s) 262, 451, 622, 1054
AluI AGCT 4 cut(s) 262, 451, 622, 1054
Alw21I GWGCWC 3 cut(s) 264, 453, 488
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 1 cut(s) 880
AlwNI CAGNNNCTG 1 cut(s) 917
AoxI GGCC 5 cut(s) 87, 139, 411, 435, 939
ApeKI GCWGC 2 cut(s) 281, 689
AspLEI GCGC 4 cut(s) 69, 206, 493, 535
AspS9I GGNCC 6 cut(s) 140, 229, 436, 568, 592, 698
AsuC2I CCSGG 5 cut(s) 28, 289, 322, 461, 1043
AsuHPI GGTGA 6 cut(s) 184, 191, 359, 388, 988, 1103
AvaII GGWCC 4 cut(s) 229, 568, 592, 698
AxyI CCTNAGG 1 cut(s) 596
BalI TGGCCA 1 cut(s) 941
BanI GGYRCC 3 cut(s) 203, 296, 532
BanII GRGCYC 3 cut(s) 264, 328, 453
BbsI GAAGAC 3 cut(s) 24, 683, 1074
Bbv12I GWGCWC 3 cut(s) 264, 453, 488
BbvI GCAGC 2 cut(s) 268, 676
BccI CCATC 4 cut(s) 217, 218, 703, 796
BceAI ACGGC 6 cut(s) 107, 217, 310, 376, 398, 520
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 2 cut(s) 86, 275
BcnI CCSGG 5 cut(s) 28, 289, 322, 461, 1043
BcoDI GTCTC 1 cut(s) 406
BfoI RGCGCY 2 cut(s) 207, 536
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 6 cut(s) 21, 102, 243, 282, 285, 690
BlsI GCNGC 6 cut(s) 22, 103, 244, 283, 286, 691
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 7 cut(s) 28, 86, 275, 289, 322, 461, 1043
Bme18I GGWCC 4 cut(s) 229, 568, 592, 698
BmgT120I GGNCC 6 cut(s) 140, 229, 436, 568, 592, 698
BmiI GGNNCC 7 cut(s) 142, 205, 298, 534, 570, 631, 700
BmrFI CCNGG 7 cut(s) 28, 86, 275, 289, 322, 461, 1043
BmsI GCATC 3 cut(s) 240, 538, 898
BpiI GAAGAC 3 cut(s) 24, 683, 1074
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 5 cut(s) 28, 289, 322, 461, 1043
BsaHI GRCGYC 6 cut(s) 78, 120, 183, 204, 420, 533
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 9 cut(s) 26, 136, 273, 288, 321, 358, 372, 432, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 445, 657
Bse21I CCTNAGG 1 cut(s) 596
Bse3DI GCAATG 2 cut(s) 926, 1020
BseBI CCWGG 2 cut(s) 86, 275
BseDI CCNNGG 9 cut(s) 26, 136, 273, 288, 321, 358, 372, 432, 444
BseGI GGATG 7 cut(s) 93, 210, 553, 714, 913, 973, 985
BseLI CCNNNNNNNGG 3 cut(s) 27, 445, 657
BseMI GCAATG 2 cut(s) 926, 1020
BseMII CTCAG 2 cut(s) 587, 853
BseRI GAGGAG 4 cut(s) 341, 836, 1061, 1091
BseXI GCAGC 2 cut(s) 268, 676
BseYI CCCAGC 1 cut(s) 1054
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 5 cut(s) 89, 141, 413, 437, 941
BshNI GGYRCC 3 cut(s) 203, 296, 532
BsiEI CGRYCG 1 cut(s) 460
BsiHKAI GWGCWC 3 cut(s) 264, 453, 488
BsiSI CCGG 6 cut(s) 28, 288, 321, 460, 581, 1042
BslFI GGGAC 4 cut(s) 256, 305, 614, 684
BslI CCNNNNNNNGG 3 cut(s) 27, 445, 657
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 4 cut(s) 256, 305, 614, 684
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 5 cut(s) 89, 141, 413, 437, 941
Bso31I GGTCTC 1 cut(s) 406
Bsp1286I GDGCHC 4 cut(s) 264, 328, 453, 488
Bsp143I GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
Bsp19I CCATGG 1 cut(s) 432
BspANI GGCC 5 cut(s) 89, 141, 413, 437, 941
BspCNI CTCAG 2 cut(s) 588, 852
BspLI GGNNCC 7 cut(s) 142, 205, 298, 534, 570, 631, 700
BspPI GGATC 1 cut(s) 880
BspT107I GGYRCC 3 cut(s) 203, 296, 532
BspTNI GGTCTC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 926, 1020
BssECI CCNNGG 9 cut(s) 26, 136, 273, 288, 321, 358, 372, 432, 444
BssMI GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
BssNI GRCGYC 6 cut(s) 78, 120, 183, 204, 420, 533
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 86, 275
Bst4CI ACNGT 6 cut(s) 112, 179, 307, 376, 634, 652
Bst6I CTCTTC 1 cut(s) 887
BstACI GRCGYC 6 cut(s) 78, 120, 183, 204, 420, 533
BstC8I GCNNGC 5 cut(s) 106, 240, 439, 484, 1016
BstDEI CTNAG 2 cut(s) 596, 839
BstDSI CCRYGG 4 cut(s) 358, 372, 432, 444
BstF5I GGATG 7 cut(s) 93, 210, 553, 714, 913, 973, 985
BstH2I RGCGCY 2 cut(s) 207, 536
BstHHI GCGC 4 cut(s) 69, 206, 493, 535
BstKTI GATC 7 cut(s) 165, 381, 408, 612, 858, 888, 922
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 9 cut(s) 11, 20, 147, 259, 488, 532, 539, 548, 725
BstNI CCWGG 2 cut(s) 86, 275
BstSCI CCNGG 7 cut(s) 26, 84, 273, 287, 320, 459, 1041
BstV1I GCAGC 2 cut(s) 268, 676
BstV2I GAAGAC 3 cut(s) 24, 683, 1074
BstXI CCANNNNNNTGG 4 cut(s) 151, 692, 709, 955
Bsu36I CCTNAGG 1 cut(s) 596
BsuRI GGCC 5 cut(s) 89, 141, 413, 437, 941
BtgI CCRYGG 4 cut(s) 358, 372, 432, 444
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 7 cut(s) 93, 210, 553, 714, 913, 973, 985
BtsI GCAGTG 4 cut(s) 344, 486, 558, 918
BtsIMutI CAGTG 5 cut(s) 344, 486, 558, 567, 918
Cac8I GCNNGC 5 cut(s) 106, 240, 439, 484, 1016
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 4 cut(s) 69, 206, 493, 535
Cfr13I GGNCC 6 cut(s) 140, 229, 436, 568, 592, 698
CseI GACGC 3 cut(s) 128, 287, 532
Csp6I GTAC 1 cut(s) 517
CviAII CATG 2 cut(s) 151, 433
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 2 cut(s) 596, 839
DinI GGCGCC 2 cut(s) 205, 534
DpnI GATC 7 cut(s) 164, 380, 407, 611, 857, 887, 921
DpnII GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
DrdI GACNNNNNNGTC 1 cut(s) 922
DseDI GACNNNNNNGTC 1 cut(s) 922
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
EciI GGCGGA 2 cut(s) 71, 642
Ecl136II GAGCTC 2 cut(s) 262, 451
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 3 cut(s) 264, 328, 453
Eco31I GGTCTC 1 cut(s) 406
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 4 cut(s) 229, 568, 592, 698
Eco53kI GAGCTC 2 cut(s) 262, 451
Eco81I CCTNAGG 1 cut(s) 596
EcoICRI GAGCTC 2 cut(s) 262, 451
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 84, 273
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 3 cut(s) 264, 328, 453
EgeI GGCGCC 2 cut(s) 205, 534
EheI GGCGCC 2 cut(s) 205, 534
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 2 cut(s) 154, 436
FaiI YATR 7 cut(s) 152, 434, 779, 795, 845, 1031, 1062
FaqI GGGAC 4 cut(s) 256, 305, 614, 684
FatI CATG 2 cut(s) 150, 432
FauI CCCGC 3 cut(s) 113, 247, 446
FblI GTMKAC 4 cut(s) 57, 417, 636, 863
Fnu4HI GCNGC 6 cut(s) 21, 102, 243, 282, 285, 690
FokI GGATG 7 cut(s) 80, 197, 560, 721, 920, 980, 992
FriOI GRGCYC 3 cut(s) 264, 328, 453
Fsp4HI GCNGC 6 cut(s) 21, 102, 243, 282, 285, 690
GlaI GCGC 4 cut(s) 68, 205, 492, 534
GluI GCNGC 6 cut(s) 21, 102, 243, 282, 285, 690
GsaI CCCAGC 1 cut(s) 1058
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 2 cut(s) 207, 536
HaeIII GGCC 5 cut(s) 89, 141, 413, 437, 941
HapII CCGG 6 cut(s) 28, 288, 321, 460, 581, 1042
HgaI GACGC 3 cut(s) 128, 287, 532
HhaI GCGC 4 cut(s) 69, 206, 493, 535
Hin1I GRCGYC 6 cut(s) 78, 120, 183, 204, 420, 533
Hin1II CATG 2 cut(s) 154, 436
Hin6I GCGC 4 cut(s) 67, 204, 491, 533
HinP1I GCGC 4 cut(s) 67, 204, 491, 533
HincII GTYRAC 4 cut(s) 58, 418, 637, 864
HindII GTYRAC 4 cut(s) 58, 418, 637, 864
HinfI GANTC 7 cut(s) 47, 386, 464, 511, 733, 1003, 1079
HpaII CCGG 6 cut(s) 28, 288, 321, 460, 581, 1042
HphI GGTGA 6 cut(s) 184, 191, 359, 388, 988, 1103
Hpy166II GTNNAC 6 cut(s) 58, 418, 568, 592, 637, 864
Hpy188I TCNGA 5 cut(s) 385, 457, 756, 790, 1008
Hpy188III TCNNGA 7 cut(s) 403, 424, 508, 607, 613, 742, 889
Hpy8I GTNNAC 6 cut(s) 58, 418, 568, 592, 637, 864
HpyAV CCTTC 2 cut(s) 709, 811
HpyCH4III ACNGT 6 cut(s) 112, 179, 307, 376, 634, 652
HpyCH4IV ACGT 4 cut(s) 54, 78, 183, 420
HpyCH4V TGCA 3 cut(s) 551, 911, 931
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 20, 147, 259, 488, 532, 539, 548, 725
HpyF3I CTNAG 2 cut(s) 596, 839
HpySE526I ACGT 4 cut(s) 54, 78, 183, 420
Hsp92I GRCGYC 6 cut(s) 78, 120, 183, 204, 420, 533
Hsp92II CATG 2 cut(s) 154, 436
HspAI GCGC 4 cut(s) 67, 204, 491, 533
KasI GGCGCC 2 cut(s) 203, 532
Kzo9I GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
LmnI GCTCC 2 cut(s) 396, 448
Lsp1109I GCAGC 2 cut(s) 268, 676
LweI GCATC 3 cut(s) 240, 538, 898
MaeII ACGT 4 cut(s) 54, 78, 183, 420
MaeIII GTNAC 2 cut(s) 179, 913
MalI GATC 7 cut(s) 164, 380, 407, 611, 857, 887, 921
MboI GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
MboII GAAGA 7 cut(s) 24, 628, 688, 733, 865, 904, 1074
MhlI GDGCHC 4 cut(s) 264, 328, 453, 488
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 3 cut(s) 585, 829, 1009
MluNI TGGCCA 1 cut(s) 941
Mly113I GGCGCC 2 cut(s) 204, 533
MlyI GAGTC 5 cut(s) 56, 380, 520, 997, 1088
MmeI TCCRAC 2 cut(s) 408, 480
Mox20I TGGCCA 1 cut(s) 941
MscI TGGCCA 1 cut(s) 941
MseI TTAA 4 cut(s) 474, 654, 849, 963
MslI CAYNNNNRTG 1 cut(s) 707
Msp20I TGGCCA 1 cut(s) 941
MspI CCGG 6 cut(s) 28, 288, 321, 460, 581, 1042
MspR9I CCNGG 7 cut(s) 28, 86, 275, 289, 322, 461, 1043
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 2 cut(s) 86, 275
MwoI GCNNNNNNNGC 9 cut(s) 11, 20, 147, 259, 488, 532, 539, 548, 725
NarI GGCGCC 2 cut(s) 204, 533
NciI CCSGG 5 cut(s) 28, 289, 322, 461, 1043
NcoI CCATGG 1 cut(s) 432
NdeII GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
NlaIII CATG 2 cut(s) 154, 436
NlaIV GGNNCC 7 cut(s) 142, 205, 298, 534, 570, 631, 700
NmeAIII GCCGAG 2 cut(s) 117, 603
NmuCI GTSAC 2 cut(s) 179, 913
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 630, 642
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 464, 733
PflFI GACNNNGTC 2 cut(s) 46, 122
PfoI TCCNGGA 1 cut(s) 1041
PkrI GCNGC 6 cut(s) 22, 103, 244, 283, 286, 691
PleI GAGTC 5 cut(s) 55, 380, 519, 997, 1087
PluTI GGCGCC 2 cut(s) 207, 536
PpsI GAGTC 5 cut(s) 55, 380, 519, 997, 1087
PpuMI RGGWCCY 1 cut(s) 229
Psp124BI GAGCTC 2 cut(s) 264, 453
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 84, 273
PspFI CCCAGC 1 cut(s) 1054
PspGI CCWGG 2 cut(s) 84, 273
PspN4I GGNNCC 7 cut(s) 142, 205, 298, 534, 570, 631, 700
PspPI GGNCC 6 cut(s) 140, 229, 436, 568, 592, 698
PspPPI RGGWCCY 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 917
PsyI GACNNNGTC 2 cut(s) 46, 122
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 707
SacI GAGCTC 2 cut(s) 264, 453
SalI GTCGAC 4 cut(s) 56, 416, 635, 862
SaqAI TTAA 4 cut(s) 474, 654, 849, 963
SatI GCNGC 6 cut(s) 21, 102, 243, 282, 285, 690
Sau3AI GATC 7 cut(s) 162, 378, 405, 609, 855, 885, 919
Sau96I GGNCC 6 cut(s) 140, 229, 436, 568, 592, 698
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 5 cut(s) 56, 380, 520, 997, 1088
ScrFI CCNGG 7 cut(s) 28, 86, 275, 289, 322, 461, 1043
SduI GDGCHC 4 cut(s) 264, 328, 453, 488
SfaNI GCATC 3 cut(s) 240, 538, 898
SfoI GGCGCC 2 cut(s) 205, 534
SgrDI CGTCGACG 2 cut(s) 416, 635
SinI GGWCC 4 cut(s) 229, 568, 592, 698
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 3 cut(s) 585, 829, 1009
SspDI GGCGCC 2 cut(s) 203, 532
SstI GAGCTC 2 cut(s) 264, 453
StyD4I CCNGG 7 cut(s) 26, 84, 273, 287, 320, 459, 1041
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 6 cut(s) 112, 179, 307, 376, 634, 652
TaiI ACGT 4 cut(s) 57, 81, 186, 423
TaqI TCGA 9 cut(s) 57, 258, 404, 417, 521, 636, 669, 768, 863
TaqII GACCGA 1 cut(s) 59
TasI AATT 3 cut(s) 585, 829, 1009
TatI WGTACW 1 cut(s) 516
TauI GCSGC 4 cut(s) 23, 104, 245, 287
TfiI GAWTC 2 cut(s) 464, 733
Tru1I TTAA 4 cut(s) 474, 654, 849, 963
Tru9I TTAA 4 cut(s) 474, 654, 849, 963
TscAI CASTG 5 cut(s) 344, 493, 558, 567, 918
TseFI GTSAC 2 cut(s) 179, 913
TseI GCWGC 2 cut(s) 281, 689
Tsp45I GTSAC 2 cut(s) 179, 913
TspRI CASTG 5 cut(s) 344, 493, 558, 567, 918
Tth111I GACNNNGTC 2 cut(s) 46, 122
VpaK11BI GGWCC 4 cut(s) 229, 568, 592, 698
XcmI CCANNNNNNNNNTGG 2 cut(s) 692, 955
XmiI GTMKAC 4 cut(s) 57, 417, 636, 863
ZraI GACGTC 3 cut(s) 79, 184, 421
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.