Rmu_sc0030900.1_g000002

beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030900.1
OG0031018
Physical Location & Seq
Forward (+)
1975 .. 3935
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030900.1_g000002.1.cds

Sequence Viewer

Length: 807 bp
atgcttccttgcatgagccacaacttcaattgctgccacaccaccatcactggaggccgcgccgtgcccatcacttcttggggcgactctacgtctcgttgtagggacgtcaatccttacaagaacggagaggagatgggtggagatggaaatggagatgtagatggaggaggtgggcgaagatggatatggaggaataggcggaagcaaagtgtggacgtcgatgcagctgaggcgttccaggcggcgacggaggcttgcagcttgcagaagggaggccggaggcatcctggactgttctgggtagcgttcgaggtcagggttgtaggtctgggcagcaacccgacctgcaactgcagtttttctgcagcgagctgcaacccagtcaccagtgactccaccgactacagaccgctccatccgatccctggcgtcagtcctgcaagccccgccgctccgtcgcaccctgagccaagttgcagcgtcgacgtccgcactttaacaacagtgcagacgcttgtggagccacttgtatatggtgattacccgttcattatgaaagctctagtaaaggatggacttccagaattcactgatgagcagaaagagttggtgaaagggtcattcgattatattggggtgaactactatacttcccgattcgcggctccaatagcaatagtcgacagtgaagaaattaccagctttgatcagtaccagcacgttaacatcacagtggatggaccagatggtgaacccataggccctgcagtaagaactaagaacgatcgtattattgcgtcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

268

Amino Acids

29.02

Weight (kDa)

5.25

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031018)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0030900.1_g000002 Rmu_ssc0000313.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 111, 222, 492
Acc36I ACCTGC 1 cut(s) 356
AccBSI CCGCTC 2 cut(s) 415, 455
AccI GTMKAC 2 cut(s) 486, 684
AccII CGCG 2 cut(s) 60, 665
AciI CCGC 8 cut(s) 58, 202, 245, 413, 450, 453, 493, 665
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 587
AcyI GRCGYC 4 cut(s) 108, 219, 432, 489
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 2 cut(s) 428, 664
AgsI TTSAA 1 cut(s) 28
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 3 cut(s) 240, 289, 427
AluBI AGCT 5 cut(s) 230, 264, 375, 563, 705
AluI AGCT 5 cut(s) 230, 264, 375, 563, 705
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 418
AoxI GGCC 3 cut(s) 55, 277, 763
ApeKI GCWGC 7 cut(s) 33, 227, 261, 336, 368, 375, 480
ApoI RAATTY 1 cut(s) 587
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 743, 764
AsuHPI GGTGA 5 cut(s) 379, 551, 625, 652, 764
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 7 cut(s) 20, 239, 273, 348, 362, 380, 492
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 3 cut(s) 242, 291, 429
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 4 cut(s) 355, 366, 406, 768
BfuAI ACCTGC 1 cut(s) 356
Bme1390I CCNGG 3 cut(s) 242, 291, 429
Bme18I GGWCC 1 cut(s) 743
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 743, 764
BmiI GGNNCC 2 cut(s) 525, 669
BmrFI CCNGG 3 cut(s) 242, 291, 429
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 214, 295
BmuI ACTGGG 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 2 cut(s) 231, 468
BsaHI GRCGYC 4 cut(s) 108, 219, 432, 489
BsaJI CCNNGG 1 cut(s) 427
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 664
Bse1I ACTGG 3 cut(s) 55, 383, 390
BseBI CCWGG 3 cut(s) 242, 291, 429
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 4 cut(s) 286, 418, 580, 745
BseLI CCNNNNNNNGG 2 cut(s) 428, 664
BseMII CTCAG 2 cut(s) 222, 459
BseNI ACTGG 3 cut(s) 55, 383, 390
BseRI GAGGAG 2 cut(s) 146, 183
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 7 cut(s) 20, 239, 273, 348, 362, 380, 492
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 60, 665
Bsh1285I CGRYCG 1 cut(s) 790
BshFI GGCC 3 cut(s) 57, 279, 765
BsiEI CGRYCG 1 cut(s) 790
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 428, 664
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 3 cut(s) 57, 279, 765
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 423, 709, 787
BspACI CCGC 8 cut(s) 58, 202, 245, 413, 450, 453, 493, 665
BspANI GGCC 3 cut(s) 57, 279, 765
BspCNI CTCAG 2 cut(s) 223, 460
BspFNI CGCG 2 cut(s) 60, 665
BspLI GGNNCC 2 cut(s) 525, 669
BspMAI CTGCAG 3 cut(s) 359, 370, 772
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 418
BsrBI CCGCTC 2 cut(s) 415, 455
BsrI ACTGG 3 cut(s) 55, 383, 390
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 3 cut(s) 423, 709, 787
BssNI GRCGYC 4 cut(s) 108, 219, 432, 489
Bst2UI CCWGG 3 cut(s) 242, 291, 429
Bst4CI ACNGT 4 cut(s) 297, 508, 689, 736
BstACI GRCGYC 4 cut(s) 108, 219, 432, 489
BstC8I GCNNGC 4 cut(s) 259, 266, 373, 445
BstDEI CTNAG 3 cut(s) 231, 468, 780
BstF5I GGATG 4 cut(s) 286, 418, 580, 745
BstFNI CGCG 2 cut(s) 60, 665
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 426, 712, 790
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 423, 709, 787
BstMCI CGRYCG 1 cut(s) 790
BstMWI GCNNNNNNNGC 7 cut(s) 233, 242, 254, 449, 469, 523, 674
BstNI CCWGG 3 cut(s) 242, 291, 429
BstSCI CCNGG 3 cut(s) 240, 289, 427
BstSFI CTRYAG 4 cut(s) 355, 366, 406, 768
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 2 cut(s) 60, 665
BstV1I GCAGC 7 cut(s) 20, 239, 273, 348, 362, 380, 492
BsuRI GGCC 3 cut(s) 57, 279, 765
BtsCI GGATG 4 cut(s) 286, 418, 580, 745
BtsIMutI CAGTG 6 cut(s) 48, 397, 513, 591, 694, 741
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 4 cut(s) 259, 266, 373, 445
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 743, 764
CseI GACGC 4 cut(s) 421, 472, 523, 789
Csp6I GTAC 1 cut(s) 715
CviAII CATG 1 cut(s) 13
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 3 cut(s) 231, 468, 780
DpnI GATC 3 cut(s) 425, 711, 789
DpnII GATC 3 cut(s) 423, 709, 787
DriI GACNNNNNGTC 1 cut(s) 91
Eam1105I GACNNNNNGTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 3 cut(s) 240, 289, 427
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 14, 190, 535, 537, 557, 633, 651, 761
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 457
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 2 cut(s) 486, 684
FokI GGATG 4 cut(s) 273, 405, 587, 752
FspBI CTAG 1 cut(s) 566
GlaI GCGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 3 cut(s) 57, 279, 765
HapII CCGG 1 cut(s) 280
HgaI GACGC 4 cut(s) 421, 472, 523, 789
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 4 cut(s) 108, 219, 432, 489
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 3 cut(s) 487, 685, 727
HindII GTYRAC 3 cut(s) 487, 685, 727
HinfI GANTC 3 cut(s) 86, 395, 660
HpaI GTTAAC 1 cut(s) 727
HpaII CCGG 1 cut(s) 280
HphI GGTGA 5 cut(s) 379, 551, 625, 652, 764
Hpy166II GTNNAC 6 cut(s) 217, 487, 643, 685, 727, 755
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 2 cut(s) 584, 657
Hpy8I GTNNAC 6 cut(s) 217, 487, 643, 685, 727, 755
Hpy99I CGWCG 5 cut(s) 224, 253, 463, 488, 491
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 4 cut(s) 297, 508, 689, 736
HpyCH4IV ACGT 5 cut(s) 92, 108, 219, 489, 723
HpyF10VI GCNNNNNNNGC 7 cut(s) 233, 242, 254, 449, 469, 523, 674
HpyF3I CTNAG 3 cut(s) 231, 468, 780
HpySE526I ACGT 5 cut(s) 92, 108, 219, 489, 723
Hsp92I GRCGYC 4 cut(s) 108, 219, 432, 489
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 709
KspAI GTTAAC 1 cut(s) 727
Kzo9I GATC 3 cut(s) 423, 709, 787
LmnI GCTCC 4 cut(s) 420, 460, 523, 673
Lsp1109I GCAGC 7 cut(s) 20, 239, 273, 348, 362, 380, 492
LweI GCATC 2 cut(s) 214, 295
MaeI CTAG 1 cut(s) 566
MaeII ACGT 5 cut(s) 92, 108, 219, 489, 723
MaeIII GTNAC 2 cut(s) 385, 392
MalI GATC 3 cut(s) 425, 711, 789
MbiI CCGCTC 2 cut(s) 415, 455
MboI GATC 3 cut(s) 423, 709, 787
MboII GAAGA 2 cut(s) 192, 704
MfeI CAATTG 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 28, 587, 696
MlyI GAGTC 2 cut(s) 80, 389
MseI TTAA 2 cut(s) 500, 726
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 3 cut(s) 242, 291, 429
MunI CAATTG 1 cut(s) 28
MvaI CCWGG 3 cut(s) 242, 291, 429
MvnI CGCG 2 cut(s) 60, 665
MwoI GCNNNNNNNGC 7 cut(s) 233, 242, 254, 449, 469, 523, 674
NdeII GATC 3 cut(s) 423, 709, 787
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 525, 669
NmuCI GTSAC 2 cut(s) 385, 392
PfeI GAWTC 1 cut(s) 660
PfoI TCCNGGA 1 cut(s) 289
Ple19I CGATCG 1 cut(s) 790
PleI GAGTC 2 cut(s) 80, 389
PpsI GAGTC 2 cut(s) 80, 389
Psp6I CCWGG 3 cut(s) 240, 289, 427
PspGI CCWGG 3 cut(s) 240, 289, 427
PspN4I GGNNCC 2 cut(s) 525, 669
PspPI GGNCC 2 cut(s) 743, 764
PstI CTGCAG 3 cut(s) 359, 370, 772
PvuI CGATCG 1 cut(s) 790
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
RseI CAYNNNNRTG 1 cut(s) 734
SalI GTCGAC 2 cut(s) 485, 683
SaqAI TTAA 2 cut(s) 500, 726
Sau3AI GATC 3 cut(s) 423, 709, 787
Sau96I GGNCC 2 cut(s) 743, 764
SchI GAGTC 2 cut(s) 80, 389
ScrFI CCNGG 3 cut(s) 242, 291, 429
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 214, 295
SfcI CTRYAG 4 cut(s) 355, 366, 406, 768
SgrDI CGTCGACG 1 cut(s) 485
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 734
Sse9I AATT 3 cut(s) 28, 587, 696
SsiI CCGC 8 cut(s) 58, 202, 245, 413, 450, 453, 493, 665
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 3 cut(s) 240, 289, 427
TaaI ACNGT 4 cut(s) 297, 508, 689, 736
TaiI ACGT 5 cut(s) 95, 111, 222, 492, 726
TaqI TCGA 5 cut(s) 222, 312, 486, 627, 684
TasI AATT 3 cut(s) 28, 587, 696
TauI GCSGC 4 cut(s) 60, 248, 455, 668
TfiI GAWTC 1 cut(s) 660
Tru1I TTAA 2 cut(s) 500, 726
Tru9I TTAA 2 cut(s) 500, 726
TscAI CASTG 6 cut(s) 55, 397, 513, 598, 694, 741
TseFI GTSAC 2 cut(s) 385, 392
TseI GCWGC 7 cut(s) 33, 227, 261, 336, 368, 375, 480
Tsp45I GTSAC 2 cut(s) 385, 392
TspDTI ATGAA 2 cut(s) 541, 572
TspGWI ACGGA 3 cut(s) 141, 266, 447
TspRI CASTG 6 cut(s) 55, 397, 513, 598, 694, 741
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 2 cut(s) 486, 684
XspI CTAG 1 cut(s) 566
ZraI GACGTC 3 cut(s) 109, 220, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.