Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034750.1

Orthogroup ID

OG0024265

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 566

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034750.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

gctgtttttaataatacggaggaatttgtactgtccatggatgaaccaagcaatgagattgttatctgggatgctctgacagcagaagtagtagcaaggtggccatccaatcatattggtgctttccgctggctcgagcactcaccaactgaagccgcatttgtttcgtgtgggactgacagatcaatacggttctggaaggaaggcgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Mito_carr WD40

Protein Analysis

70

Amino Acids

7.97

Weight (kDa)

4.6

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024265)

Species	Orthologous Gene IDs
malus_domestica	MD14G1214400.v1.1
pyrus_communis	pycom14g17780
rosa_multiflora	Rmu_sc0034750.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 156
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	46, 76, 104
BseJI	GATNNNNATC	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	182
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	2 cut(s)	127, 156
BspANI	GGCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	33, 192
BstC8I	GCNNGC	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	46, 76, 104
BstKTI	GATC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	46, 76, 104
Cac8I	GCNNGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	103, 133, 155
CviKI_1	RGCY	3 cut(s)	103, 133, 155
CviQI	GTAC	1 cut(s)	29
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 114, 211
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	3 cut(s)	53, 83, 91
Fsp4HI	GCNGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	193, 197
HpyCH4III	ACNGT	2 cut(s)	33, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	52, 115, 181
LweI	GCATC	1 cut(s)	61
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	103
MnlI	CCTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	134
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	61
Sfr274I	CTCGAG	1 cut(s)	134
SgeI	CNNG	9 cut(s)	49, 60, 79, 108, 142, 146, 148, 180, 208
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	127, 156
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	33, 192
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	32
XapI	RAATTY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.