Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035054.1

Orthogroup ID

OG0031577

Physical Location & Seq

Genomic Coordinates Forward (+)

12856 .. 14116

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgaagctgggaatccaaattcctgtcagttctcccaaggagttgaacaacagcagcaacgttcctgcatcacttctcctccctcaccttcagaatctttttcagcagacatcaattcaacaggatattattgcgaatttgctgagtagcttgcaaccagctgaggcagtagaggctacccaaaatggaaagttgcctccactgccccgcagttctgagaacaatggaaatgtggaacctgcagtttctgagagggagcggttactgctcctcaaggtcacggagcttcaatcaaggatgaacaacttgaatgatgaactgactgctgaaaaaatgagacacattcaattgcaacaacagctaaatgctgcatctgagcaagaagtaaatgggaacagaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

5.68

Isoelectric Point (pI)

68.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031577)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8464765.1_g000001 Rmu_sc0035054.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	259
AciI	CCGC	2 cut(s)	208, 259
AclI	AACGTT	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	18, 136
AcuI	CTGAAG	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	46, 119, 290, 310, 347
AluBI	AGCT	5 cut(s)	7, 150, 161, 286, 361
AluI	AGCT	5 cut(s)	7, 150, 161, 286, 361
Alw26I	GTCTC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	54, 368
ApoI	RAATTY	2 cut(s)	18, 136
AsuHPI	GGTGA	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	66, 355
BcoDI	GTCTC	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	55, 369
BlsI	GCNGC	2 cut(s)	56, 370
BmiI	GGNNCC	1 cut(s)	237
BmsI	GCATC	2 cut(s)	77, 380
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	303
BseMII	CTCAG	5 cut(s)	134, 153, 207, 240, 366
BseRI	GAGGAG	2 cut(s)	68, 260
BseXI	GCAGC	2 cut(s)	66, 355
BseYI	CCCAGC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	208, 259
BspCNI	CTCAG	5 cut(s)	135, 154, 208, 241, 367
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	5 cut(s)	143, 162, 216, 249, 375
BstF5I	GGATG	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 202, 265, 358
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	66, 355
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	248
CviJI	RGCY	6 cut(s)	7, 150, 161, 176, 286, 361
CviKI_1	RGCY	6 cut(s)	7, 150, 161, 176, 286, 361
DdeI	CTNAG	5 cut(s)	143, 162, 216, 249, 375
Eco130I	CCWWGG	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	55, 369
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	55, 369
GluI	GCNGC	2 cut(s)	55, 369
GsaI	CCCAGC	1 cut(s)	11
HinfI	GANTC	2 cut(s)	12, 94
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	4 cut(s)	93, 217, 250, 376
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	68, 154, 242, 352, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 202, 265, 358
HpyF3I	CTNAG	5 cut(s)	143, 162, 216, 249, 375
HpySE526I	ACGT	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	256, 273, 283
LpnPI	CCDG	5 cut(s)	36, 78, 107, 171, 252
Lsp1109I	GCAGC	2 cut(s)	66, 355
LweI	GCATC	2 cut(s)	77, 380
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	261, 277
MbiI	CCGCTC	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	347
MluCI	AATT	4 cut(s)	18, 114, 136, 347
MnlI	CCTC	7 cut(s)	89, 93, 157, 166, 207, 246, 281
MspA1I	CMGCKG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	347
MwoI	GCNNNNNNNGC	4 cut(s)	173, 202, 265, 358
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	12, 94
PkrI	GCNGC	2 cut(s)	56, 370
Psp1406I	AACGTT	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	161
SatI	GCNGC	2 cut(s)	55, 369
SetI	ASST	9 cut(s)	9, 63, 90, 152, 163, 241, 279, 288, 363
SfaNI	GCATC	2 cut(s)	77, 380
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	18, 114, 136, 347
SsiI	CCGC	2 cut(s)	208, 259
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	63
TasI	AATT	4 cut(s)	18, 114, 136, 347
TfiI	GAWTC	2 cut(s)	12, 94
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	54, 368
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	17, 314, 330
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	2 cut(s)	18, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.