Rmu_sc0035580.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035580.1
OG0031346
Physical Location & Seq
Forward (+)
1 .. 1838
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035580.1_g000001.1.cds

Sequence Viewer

Length: 870 bp
ggccaaaagctcggtttcccggctttaaaggaacgatctcctacatatggcatatcaaatcgggtctcacgatccaggatgtgggtgatcacttcttgttccagtttgacggtgaagctgatcgcaaccgtgctctccacggtggaccttggtttttataggaataccatgctcatggtaggagattttgatgggatgggttcagtggaggcagtccctctgtggagtttggagacatgggtggcggtaagaggtttgctggtggctcttcgaaacaagactgttttaaacctaattggatcaaacattggtcaggtgatccgttttgatcaaacggctctctgccgcaaggaggaggagcaaagaattcggttgacattggatactcgtcgtcgagtttgtacctggatgatgtttgaattctctgccacaattgaacttgagatcactctgatctatgaaaaggagcagtcgcttcaagggccgcaggctgctgcaatggccaatctgtcactggaggggctacgtatagactctgttttgggtgaacgtctgatccagaaggaggggactgcggaaggtttgcaggtttcagagttggttctcgtgggctcaaaacgcaaggcagcgtttgtgcttgctagggaaaggaaaaggtatttagctctcccttcttctgaattgcaagtcgatggaaatactactctgatgctgcagcacaagaatggtaaaatcattgtatcccccaagaagaagaaacttgggcaccctcgtggtattggagttgttgagaaggccattgagacagagatttctgaggcggatggtggagagaaggaagtggtcatggaaggggaatctactccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

289

Amino Acids

32.02

Weight (kDa)

9.08

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031346)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005631.1_g000002 Rmu_sc0035580.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 765
AccB7I CCANNNNNTGG 1 cut(s) 81
AciI CCGC 5 cut(s) 245, 346, 485, 575, 821
AclWI GGATC 4 cut(s) 66, 307, 313, 550
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 2 cut(s) 366, 419
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 4 cut(s) 47, 81, 352, 565
AgsI TTSAA 3 cut(s) 419, 437, 479
AjnI CCWGG 2 cut(s) 74, 404
AleI CACNNNNGTG 1 cut(s) 771
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 3 cut(s) 10, 118, 665
AluI AGCT 3 cut(s) 10, 118, 665
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 70, 227, 797
AlwI GGATC 4 cut(s) 66, 307, 313, 550
AoxI GGCC 3 cut(s) 482, 501, 795
ApeKI GCWGC 5 cut(s) 491, 494, 626, 712, 715
ApoI RAATTY 2 cut(s) 366, 419
AspS9I GGNCC 2 cut(s) 145, 482
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 97, 124, 328, 557
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 768
BalI TGGCCA 1 cut(s) 503
BanI GGYRCC 1 cut(s) 765
BanII GRGCYC 1 cut(s) 614
BauI CACGAG 2 cut(s) 605, 771
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 5 cut(s) 478, 481, 638, 699, 727
BccI CCATC 4 cut(s) 185, 190, 686, 818
BceAI ACGGC 1 cut(s) 351
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 2 cut(s) 76, 406
BciVI GTATCC 2 cut(s) 376, 751
BclI TGATCA 2 cut(s) 87, 328
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 70, 227, 797
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 713
BfuAI ACCTGC 1 cut(s) 577
BfuI GTATCC 2 cut(s) 376, 751
BisI GCNGC 7 cut(s) 346, 485, 492, 495, 627, 713, 716
BlsI GCNGC 7 cut(s) 347, 486, 493, 496, 628, 714, 717
Bme1390I CCNGG 3 cut(s) 20, 76, 406
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 145, 482
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 3 cut(s) 20, 76, 406
BmsI GCATC 1 cut(s) 699
BpmI CTGGAG 1 cut(s) 536
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 138, 148
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 81, 352, 565
Bse1I ACTGG 2 cut(s) 102, 519
Bse3DI GCAATG 1 cut(s) 504
BseBI CCWGG 2 cut(s) 76, 406
BseDI CCNNGG 2 cut(s) 138, 148
BseGI GGATG 4 cut(s) 84, 201, 414, 829
BseLI CCNNNNNNNGG 4 cut(s) 47, 81, 352, 565
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 2 cut(s) 102, 519
BseRI GAGGAG 2 cut(s) 368, 371
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 5 cut(s) 478, 481, 638, 699, 727
BshFI GGCC 4 cut(s) 3, 484, 503, 797
BshNI GGYRCC 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 2 cut(s) 200, 583
BslI CCNNNNNNNGG 4 cut(s) 47, 81, 352, 565
BsmAI GTCTC 3 cut(s) 70, 227, 797
BsmFI GGGAC 2 cut(s) 200, 583
BsnI GGCC 4 cut(s) 3, 484, 503, 797
Bso31I GGTCTC 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 135, 614, 768
BspACI CCGC 5 cut(s) 245, 346, 485, 575, 821
BspANI GGCC 4 cut(s) 3, 484, 503, 797
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 1 cut(s) 767
BspMAI CTGCAG 1 cut(s) 717
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 4 cut(s) 66, 307, 313, 550
BspQI GCTCTTC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 2 cut(s) 102, 519
BssECI CCNNGG 2 cut(s) 138, 148
BssSI CACGAG 2 cut(s) 605, 771
BssT1I CCWWGG 1 cut(s) 148
Bst2BI CACGAG 2 cut(s) 605, 771
Bst2UI CCWGG 2 cut(s) 76, 406
Bst4CI ACNGT 4 cut(s) 112, 130, 142, 283
Bst6I CTCTTC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 489, 639
BstDEI CTNAG 1 cut(s) 816
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 4 cut(s) 84, 201, 414, 829
BstMAI GTCTC 3 cut(s) 70, 227, 797
BstMWI GCNNNNNNNGC 3 cut(s) 481, 500, 618
BstNI CCWGG 2 cut(s) 76, 406
BstSCI CCNGG 3 cut(s) 18, 74, 404
BstSFI CTRYAG 1 cut(s) 713
BstSLI GKGCMC 1 cut(s) 768
BstSNI TACGTA 1 cut(s) 527
BstV1I GCAGC 5 cut(s) 478, 481, 638, 699, 727
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuI GTATCC 2 cut(s) 376, 751
BsuRI GGCC 4 cut(s) 3, 484, 503, 797
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 4 cut(s) 84, 201, 414, 829
BtsIMutI CAGTG 2 cut(s) 210, 512
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 489, 639
Cfr13I GGNCC 2 cut(s) 145, 482
Csp6I GTAC 1 cut(s) 402
CviAII CATG 4 cut(s) 169, 175, 237, 847
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 816
DraI TTTAAA 2 cut(s) 27, 288
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 836
Eco105I TACGTA 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 145
EcoRI GAATTC 2 cut(s) 366, 419
EcoRII CCWGG 2 cut(s) 74, 404
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 172, 178, 240, 850
FaqI GGGAC 2 cut(s) 200, 583
FatI CATG 4 cut(s) 168, 174, 236, 846
FauNDI CATATG 1 cut(s) 46
FbaI TGATCA 2 cut(s) 87, 328
Fnu4HI GCNGC 7 cut(s) 346, 485, 492, 495, 627, 713, 716
FokI GGATG 4 cut(s) 91, 208, 421, 836
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 7 cut(s) 346, 485, 492, 495, 627, 713, 716
FspBI CTAG 1 cut(s) 642
GluI GCNGC 7 cut(s) 346, 485, 492, 495, 627, 713, 716
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 4 cut(s) 3, 484, 503, 797
HapII CCGG 1 cut(s) 20
Hin1II CATG 4 cut(s) 172, 178, 240, 850
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 2 cut(s) 533, 857
HpaII CCGG 1 cut(s) 20
HphI GGTGA 4 cut(s) 97, 124, 328, 557
Hpy166II GTNNAC 3 cut(s) 145, 375, 548
Hpy188I TCNGA 6 cut(s) 453, 555, 595, 679, 708, 817
Hpy188III TCNNGA 2 cut(s) 69, 559
Hpy8I GTNNAC 3 cut(s) 145, 375, 548
Hpy99I CGWCG 2 cut(s) 393, 396
HpyAV CCTTC 6 cut(s) 556, 572, 681, 787, 829, 845
HpyCH4III ACNGT 4 cut(s) 112, 130, 142, 283
HpyCH4IV ACGT 2 cut(s) 526, 550
HpyCH4V TGCA 4 cut(s) 497, 586, 685, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 481, 500, 618
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 2 cut(s) 526, 550
Hsp92II CATG 4 cut(s) 172, 178, 240, 850
Ksp22I TGATCA 2 cut(s) 87, 328
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 358, 466
Lsp1109I GCAGC 5 cut(s) 478, 481, 638, 699, 727
LweI GCATC 1 cut(s) 699
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 526, 550
MaeIII GTNAC 1 cut(s) 510
MboII GAAGA 4 cut(s) 260, 666, 763, 766
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 3 cut(s) 135, 614, 768
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 5 cut(s) 294, 366, 419, 432, 680
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 9 cut(s) 202, 228, 245, 346, 349, 511, 559, 780, 811
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
MseI TTAA 2 cut(s) 26, 287
MslI CAYNNNNRTG 3 cut(s) 173, 723, 771
Msp20I TGGCCA 1 cut(s) 503
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 3 cut(s) 20, 76, 406
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 2 cut(s) 76, 406
MwoI GCNNNNNNNGC 3 cut(s) 481, 500, 618
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 46
NlaIII CATG 4 cut(s) 172, 178, 240, 850
NlaIV GGNNCC 1 cut(s) 767
NmuCI GTSAC 1 cut(s) 510
NspV TTCGAA 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PfeI GAWTC 1 cut(s) 857
PflMI CCANNNNNTGG 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 7 cut(s) 347, 486, 493, 496, 628, 714, 717
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Ppu21I YACGTR 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 74, 404
PspGI CCWGG 2 cut(s) 74, 404
PspN4I GGNNCC 1 cut(s) 767
PspPI GGNCC 2 cut(s) 145, 482
PstI CTGCAG 1 cut(s) 717
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 3 cut(s) 173, 723, 771
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 26, 287
SatI GCNGC 7 cut(s) 346, 485, 492, 495, 627, 713, 716
Sau96I GGNCC 2 cut(s) 145, 482
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 3 cut(s) 20, 76, 406
SduI GDGCHC 3 cut(s) 135, 614, 768
SfaNI GCATC 1 cut(s) 699
SfcI CTRYAG 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 3 cut(s) 173, 723, 771
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SnaBI TACGTA 1 cut(s) 527
Sse9I AATT 5 cut(s) 294, 366, 419, 432, 680
SsiI CCGC 5 cut(s) 245, 346, 485, 575, 821
SspMI CTAG 1 cut(s) 642
StyD4I CCNGG 3 cut(s) 18, 74, 404
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 4 cut(s) 112, 130, 142, 283
TaiI ACGT 2 cut(s) 529, 553
TaqI TCGA 3 cut(s) 271, 394, 690
TasI AATT 5 cut(s) 294, 366, 419, 432, 680
TauI GCSGC 2 cut(s) 348, 487
TfiI GAWTC 1 cut(s) 857
Tru1I TTAA 2 cut(s) 26, 287
Tru9I TTAA 2 cut(s) 26, 287
TscAI CASTG 2 cut(s) 210, 519
TseFI GTSAC 1 cut(s) 510
TseI GCWGC 5 cut(s) 491, 494, 626, 712, 715
Tsp45I GTSAC 1 cut(s) 510
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 210, 519
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 2 cut(s) 366, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.