Rmu_sc0036967.1_g000002

Rab3 gtpase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036967.1
OG0024072
Physical Location & Seq
Forward (+)
1953 .. 3196
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036967.1_g000002.1.cds

Sequence Viewer

Length: 699 bp
atggcgaggcgggttcacacgacggaggtgggctgcatagcgtgcgaggagctcggcgagctcggcgccggaaaggaggggtggctcgtgaacactccgaacctcctctgcgccatcgacactcactgcatcgcgctcgcgaaccggtccgtgattgtggtactcgggtgggccgaccccgacgggagccgggtcaaaatccgacccgaattatcgccgattgaggccgagttcgtgacggcgattgagtggctggtgtttgatgagatgcgggtcgttgtggccgggacttctgctggctatctcctcttttactctttggctggacatttgatccataaacagatggtatatccagctaggatcatacggttgagggtccgaggaacgaagagagatttgagccatgatacatcctcggaggaggtttgtgttgttatgccaggcattctcgcccgttttgatggttcggatattcagaataagctgcagcagtggtttcaagaaacacagtctcatttttgggatcgaaatcggaggtctgatgatttgggaaattcttatggaaaattaccttaccaattatggagtgtcagcaagtatggtagttgtgctgatgcagcaatcactggcataatgcctccgccactgatggaaatccaggtattcacttctccagtagtcttccttatggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

232

Amino Acids

25.94

Weight (kDa)

5.71

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024072)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18310 FvH4_3g18310
rosa_multiflora Rmu_sc0036967.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 2 cut(s) 134, 140
AciI CCGC 3 cut(s) 10, 271, 644
AclWI GGATC 3 cut(s) 328, 371, 534
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 162
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 2 cut(s) 442, 660
AluBI AGCT 4 cut(s) 52, 61, 359, 487
AluI AGCT 4 cut(s) 52, 61, 359, 487
Alw21I GWGCWC 2 cut(s) 54, 63
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 328, 371, 534
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 3 cut(s) 171, 225, 282
ApeKI GCWGC 4 cut(s) 33, 487, 490, 620
ApoI RAATTY 1 cut(s) 556
AsiGI ACCGGT 1 cut(s) 144
AspLEI GCGC 3 cut(s) 68, 113, 136
AspS9I GGNCC 3 cut(s) 147, 171, 379
AsuC2I CCSGG 2 cut(s) 191, 286
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 147, 379
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 2 cut(s) 54, 63
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 676
Bbv12I GWGCWC 2 cut(s) 54, 63
BbvI GCAGC 4 cut(s) 20, 474, 502, 632
BccI CCATC 4 cut(s) 122, 340, 458, 646
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 2 cut(s) 444, 662
BcnI CCSGG 2 cut(s) 191, 286
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 488
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 4 cut(s) 34, 488, 491, 621
BlsI GCNGC 4 cut(s) 35, 489, 492, 622
Bme1390I CCNGG 4 cut(s) 191, 286, 444, 662
Bme18I GGWCC 2 cut(s) 147, 379
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 147, 171, 379
BmiI GGNNCC 3 cut(s) 67, 188, 380
BmrFI CCNGG 4 cut(s) 191, 286, 444, 662
BmsI GCATC 3 cut(s) 138, 258, 607
BpiI GAAGAC 1 cut(s) 676
BpmI CTGGAG 1 cut(s) 660
BpuMI CCSGG 2 cut(s) 191, 286
BsaBI GATNNNNATC 2 cut(s) 531, 656
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 382, 417
BsaWI WCCGGW 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 634, 677
Bse8I GATNNNNATC 2 cut(s) 531, 656
BseBI CCWGG 2 cut(s) 444, 662
BseDI CCNNGG 2 cut(s) 382, 417
BseGI GGATG 1 cut(s) 413
BseJI GATNNNNATC 2 cut(s) 531, 656
BseNI ACTGG 2 cut(s) 634, 677
BseRI GAGGAG 4 cut(s) 62, 95, 296, 437
BseXI GCAGC 4 cut(s) 20, 474, 502, 632
Bsh1236I CGCG 2 cut(s) 134, 140
BshFI GGCC 3 cut(s) 173, 227, 284
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 54, 63
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 4 cut(s) 69, 145, 190, 285
BslFI GGGAC 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 3 cut(s) 173, 227, 284
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 54, 63
Bsp143I GATC 3 cut(s) 333, 363, 526
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 3 cut(s) 10, 271, 644
BspANI GGCC 3 cut(s) 173, 227, 284
BspFNI CGCG 2 cut(s) 134, 140
BspLI GGNNCC 3 cut(s) 67, 188, 380
BspMAI CTGCAG 1 cut(s) 492
BspPI GGATC 3 cut(s) 328, 371, 534
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 2 cut(s) 634, 677
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 382, 417
BssMI GATC 3 cut(s) 333, 363, 526
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 444, 662
Bst4CI ACNGT 2 cut(s) 372, 513
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 43, 59, 138, 298
BstF5I GGATG 1 cut(s) 413
BstFNI CGCG 2 cut(s) 134, 140
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 113, 136
BstKTI GATC 3 cut(s) 336, 366, 529
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 3 cut(s) 333, 363, 526
BstMWI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
BstNI CCWGG 2 cut(s) 444, 662
BstSCI CCNGG 4 cut(s) 189, 284, 442, 660
BstSFI CTRYAG 1 cut(s) 488
BstUI CGCG 2 cut(s) 134, 140
BstV1I GCAGC 4 cut(s) 20, 474, 502, 632
BstV2I GAAGAC 1 cut(s) 676
BsuRI GGCC 3 cut(s) 173, 227, 284
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 413
BtsI GCAGTG 2 cut(s) 124, 500
BtsIMutI CAGTG 4 cut(s) 124, 500, 627, 647
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 4 cut(s) 43, 59, 138, 298
CfoI GCGC 3 cut(s) 68, 113, 136
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 147, 171, 379
CpoI CGGWCCG 1 cut(s) 147
Csp6I GTAC 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 144
CspI CGGWCCG 1 cut(s) 147
CviAII CATG 1 cut(s) 407
CviQI GTAC 1 cut(s) 161
DinI GGCGCC 1 cut(s) 67
DpnI GATC 3 cut(s) 335, 365, 528
DpnII GATC 3 cut(s) 333, 363, 526
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 1 cut(s) 633
Ecl136II GAGCTC 2 cut(s) 52, 61
Eco24I GRGCYC 2 cut(s) 54, 63
Eco47I GGWCC 2 cut(s) 147, 379
Eco53kI GAGCTC 2 cut(s) 52, 61
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 2 cut(s) 52, 61
EcoRII CCWGG 2 cut(s) 442, 660
EcoT38I GRGCYC 2 cut(s) 54, 63
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 1 cut(s) 410
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 406
FauI CCCGC 2 cut(s) 3, 264
Fnu4HI GCNGC 4 cut(s) 34, 488, 491, 621
FokI GGATG 1 cut(s) 400
FriOI GRGCYC 2 cut(s) 54, 63
Fsp4HI GCNGC 4 cut(s) 34, 488, 491, 621
FspBI CTAG 1 cut(s) 360
GlaI GCGC 3 cut(s) 67, 112, 135
GluI GCNGC 4 cut(s) 34, 488, 491, 621
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 3 cut(s) 173, 227, 284
HapII CCGG 4 cut(s) 69, 145, 190, 285
HhaI GCGC 3 cut(s) 68, 113, 136
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 3 cut(s) 66, 111, 134
HinP1I GCGC 3 cut(s) 66, 111, 134
HpaII CCGG 4 cut(s) 69, 145, 190, 285
Hpy166II GTNNAC 2 cut(s) 16, 91
Hpy188I TCNGA 8 cut(s) 99, 203, 383, 421, 472, 480, 537, 544
Hpy188III TCNNGA 4 cut(s) 88, 139, 235, 503
Hpy8I GTNNAC 2 cut(s) 16, 91
Hpy99I CGWCG 2 cut(s) 25, 185
HpyCH4III ACNGT 2 cut(s) 372, 513
HpyCH4V TGCA 4 cut(s) 36, 129, 490, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 3 cut(s) 66, 111, 134
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 3 cut(s) 333, 363, 526
LmnI GCTCC 2 cut(s) 49, 186
Lsp1109I GCAGC 4 cut(s) 20, 474, 502, 632
LweI GCATC 3 cut(s) 138, 258, 607
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 335, 365, 528
MboI GATC 3 cut(s) 333, 363, 526
MboII GAAGA 2 cut(s) 403, 676
MhlI GDGCHC 2 cut(s) 54, 63
MluCI AATT 4 cut(s) 209, 556, 569, 581
Mly113I GGCGCC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 226
MspI CCGG 4 cut(s) 69, 145, 190, 285
MspR9I CCNGG 4 cut(s) 191, 286, 444, 662
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 2 cut(s) 444, 662
MvnI CGCG 2 cut(s) 134, 140
MwoI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 191, 286
NdeII GATC 3 cut(s) 333, 363, 526
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 3 cut(s) 67, 188, 380
NmeAIII GCCGAG 3 cut(s) 33, 42, 253
NmuCI GTSAC 1 cut(s) 235
NruI TCGCGA 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 447
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 4 cut(s) 35, 489, 492, 622
PluTI GGCGCC 1 cut(s) 69
Psp124BI GAGCTC 2 cut(s) 54, 63
Psp6I CCWGG 2 cut(s) 442, 660
PspGI CCWGG 2 cut(s) 442, 660
PspN4I GGNNCC 3 cut(s) 67, 188, 380
PspPI GGNCC 3 cut(s) 147, 171, 379
PstI CTGCAG 1 cut(s) 492
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
Rsr2I CGGWCCG 1 cut(s) 147
RsrII CGGWCCG 1 cut(s) 147
SacI GAGCTC 2 cut(s) 54, 63
SatI GCNGC 4 cut(s) 34, 488, 491, 621
Sau3AI GATC 3 cut(s) 333, 363, 526
Sau96I GGNCC 3 cut(s) 147, 171, 379
ScrFI CCNGG 4 cut(s) 191, 286, 444, 662
SduI GDGCHC 2 cut(s) 54, 63
SfaNI GCATC 3 cut(s) 138, 258, 607
SfcI CTRYAG 1 cut(s) 488
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 2 cut(s) 147, 379
Sse9I AATT 4 cut(s) 209, 556, 569, 581
SsiI CCGC 3 cut(s) 10, 271, 644
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 2 cut(s) 54, 63
StyD4I CCNGG 4 cut(s) 189, 284, 442, 660
TaaI ACNGT 2 cut(s) 372, 513
TaqI TCGA 2 cut(s) 117, 529
TasI AATT 4 cut(s) 209, 556, 569, 581
TscAI CASTG 4 cut(s) 131, 500, 634, 654
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 33, 487, 490, 620
Tsp45I GTSAC 1 cut(s) 235
TspGWI ACGGA 2 cut(s) 38, 139
TspRI CASTG 4 cut(s) 131, 500, 634, 654
VpaK11BI GGWCC 2 cut(s) 147, 379
XapI RAATTY 1 cut(s) 556
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.