Rmu_sc0039928.1_g000001

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039928.1
OG0029310
Physical Location & Seq
Reverse (-)
2 .. 581
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039928.1_g000001.1.cds

Sequence Viewer

Length: 580 bp
atggctgactcgaactcgaactcggttgatgtcattcttgactttctgcggaagaataggttttcaagagctgaggcagctcttcgcagtgagcttggtaatcgtcctgatttgaatggtttccttcagaagcttgctcttgaagaaaaggactctggtaattcgttggaagctgaaaagggggacaaactggtggtggagaatcaagggctgggatctcggaacggtggtgaagtttcaaaggaacttatagtgaaggagatagaatgtggaactggcagaaatgggtctgaaatcaaatggaagaatgctgcttctgttggggaacgaaataaacctgttgacgtggctgggaccaatcacaagagcttcgcattctctaaaggtttagaggataccgtgcttgatttatattcatggaaggtcaatccaagcaatggtcctgctgaaccttatcaaaatgatgttggtggtagtaactccaaccaccctgagcctcagatattgcaacagtcaaggaatcatactggggagattcctgattctggtaaaagcactgtgaaatctggagaagatatta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

193

Amino Acids

20.88

Weight (kDa)

5.21

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029310)

Species Orthologous Gene IDs
pyrus_communis pycom06g20960
rosa_multiflora Rmu_sc0039928.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 437, 545
AgsI TTSAA 4 cut(s) 66, 115, 143, 240
AjiI CACGTC 1 cut(s) 346
AluBI AGCT 6 cut(s) 71, 80, 94, 133, 173, 369
AluI AGCT 6 cut(s) 71, 80, 94, 133, 173, 369
AlwI GGATC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 77, 311
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 354, 440
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 354, 440
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 89, 298
BciVI GTATCC 1 cut(s) 388
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 2 cut(s) 78, 312
BlsI GCNGC 2 cut(s) 79, 313
Bme18I GGWCC 2 cut(s) 354, 440
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 354, 440
BmiI GGNNCC 1 cut(s) 355
BmrI ACTGGG 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 537
Bpu10I CCTNAGC 2 cut(s) 72, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 545
Bse1I ACTGG 3 cut(s) 195, 280, 532
Bse3DI GCAATG 1 cut(s) 442
BseLI CCNNNNNNNGG 2 cut(s) 437, 545
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 3 cut(s) 63, 483, 512
BseNI ACTGG 3 cut(s) 195, 280, 532
BseXI GCAGC 2 cut(s) 89, 298
BseYI CCCAGC 2 cut(s) 211, 350
BslFI GGGAC 2 cut(s) 197, 367
BslI CCNNNNNNNGG 2 cut(s) 437, 545
BsmFI GGGAC 2 cut(s) 197, 367
BsmI GAATGC 2 cut(s) 313, 374
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 3 cut(s) 64, 484, 511
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 3 cut(s) 195, 280, 532
BssMI GATC 1 cut(s) 215
Bst4CI ACNGT 4 cut(s) 227, 400, 513, 559
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 72, 492, 498
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 89, 298
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuI GTATCC 1 cut(s) 388
BtrI CACGTC 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 94, 555
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 354, 440
CviAII CATG 1 cut(s) 417
DdeI CTNAG 3 cut(s) 72, 492, 498
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 354, 440
Eco57I CTGAAG 1 cut(s) 110
FaeI CATG 1 cut(s) 420
FaiI YATR 4 cut(s) 251, 412, 418, 525
FaqI GGGAC 2 cut(s) 197, 367
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 2 cut(s) 78, 312
Fsp4HI GCNGC 2 cut(s) 78, 312
GluI GCNGC 2 cut(s) 78, 312
GsaI CCCAGC 2 cut(s) 215, 354
Hin1II CATG 1 cut(s) 420
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 6 cut(s) 8, 152, 202, 520, 535, 542
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 129, 222, 292, 501
Hpy188III TCNNGA 6 cut(s) 38, 66, 107, 140, 539, 567
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 3 cut(s) 134, 250, 415
HpyCH4III ACNGT 4 cut(s) 227, 400, 513, 559
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 3 cut(s) 72, 492, 498
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 1 cut(s) 420
Kzo9I GATC 1 cut(s) 215
LguI GCTCTTC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 89, 298
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 476
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 4 cut(s) 64, 74, 155, 316
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 160
MlyI GAGTC 2 cut(s) 2, 146
MmeI TCCRAC 2 cut(s) 147, 507
MnlI CCTC 3 cut(s) 67, 385, 507
MroXI GAANNNNTTC 1 cut(s) 119
Mva1269I GAATGC 2 cut(s) 313, 374
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 2 cut(s) 313, 374
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 4 cut(s) 202, 520, 535, 542
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 79, 313
PleI GAGTC 2 cut(s) 2, 146
PpsI GAGTC 2 cut(s) 2, 146
PspFI CCCAGC 2 cut(s) 211, 350
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 354, 440
PsuI RGATCY 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 87
SatI GCNGC 2 cut(s) 78, 312
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 2 cut(s) 354, 440
SchI GAGTC 2 cut(s) 2, 146
SinI GGWCC 2 cut(s) 354, 440
Sse9I AATT 1 cut(s) 160
SsiI CCGC 1 cut(s) 49
TaaI ACNGT 4 cut(s) 227, 400, 513, 559
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 11, 17
TasI AATT 1 cut(s) 160
TfiI GAWTC 4 cut(s) 202, 520, 535, 542
TscAI CASTG 2 cut(s) 94, 562
TseI GCWGC 2 cut(s) 77, 311
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 2 cut(s) 94, 562
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 354, 440
XmnI GAANNNNTTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.