Rmu_sc0040842.1_g000001

FabA-like domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040842.1
Physical Location & Seq
Forward (+)
1 .. 814
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040842.1_g000001.1.cds

Sequence Viewer

Length: 258 bp
gcaatggctcaagtgggaggcatagttatgctgcaacctgaagtgggaggctctcgtgacagtttcttcttcgcaggaattgataaagtgaggtttaggaagcctgtgattgcaggagacactttggtcatgagaatgactttaaccaagtttcaaaaacgatttggaatagcaaagatggatggaaaggcatatgttggaggtgaggtggtctgtgaaggcgagttcttgatggctagtgggagtgggactgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.07

Weight (kDa)

9.36

Isoelectric Point (pI)

22.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031225)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002784.1_g000061 Rmu_sc0040842.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 215
BauI CACGAG 1 cut(s) 54
BbvI GCAGC 1 cut(s) 18
BccI CCATC 3 cut(s) 172, 176, 226
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 9
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 111
BspHI TCATGA 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 9
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 62
BstF5I GGATG 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 187
CciI TCATGA 1 cut(s) 129
CviAII CATG 1 cut(s) 130
CviJI RGCY 4 cut(s) 8, 51, 103, 236
CviKI_1 RGCY 4 cut(s) 8, 51, 103, 236
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 60
FaeI CATG 1 cut(s) 133
FaiI YATR 5 cut(s) 23, 29, 131, 193, 195
FatI CATG 1 cut(s) 129
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 133
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 56, 130, 229
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 34, 113
Hsp92II CATG 1 cut(s) 133
LpnPI CCDG 4 cut(s) 51, 60, 99, 117
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 2 cut(s) 58, 61
MluCI AATT 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 5 cut(s) 11, 41, 84, 194, 199
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 26, 134
NdeI CATATG 1 cut(s) 193
NlaIII CATG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 56
PagI TCATGA 1 cut(s) 129
PkrI GCNGC 1 cut(s) 33
RseI CAYNNNNRTG 2 cut(s) 26, 134
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 32
SetI ASST 4 cut(s) 40, 95, 205, 210
SmiMI CAYNNNNRTG 2 cut(s) 26, 134
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 62
TasI AATT 1 cut(s) 78
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 56
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.