Rmu_sc0041888.1_g000001

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041888.1
OG0031110
Physical Location & Seq
Forward (+)
1 .. 859
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041888.1_g000001.1.cds

Sequence Viewer

Length: 283 bp
ttgcaagtgcccgaaggaaaatgagtggattttggatccagttgttatagctgatacatatggaccagagggccttgattttgtcattgatggtgggttaagagtggctgatccatcaactgtggttgacatgacagtgtttcctcccaagatcatacgacaaggaaagggacctcaattacactggatggtggctgaagatgacaatgaagatgaatatgaagatgacaatgaacatgctgagacagtggaaagctcatctcctcaaccactcagaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

4.21

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031110)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000998.1_g000025 Rmu_sc0041888.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 30, 43, 105
AcuI CTGAAG 1 cut(s) 217
AluBI AGCT 2 cut(s) 51, 256
AluI AGCT 2 cut(s) 51, 256
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 3 cut(s) 30, 43, 105
AoxI GGCC 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 63, 71, 171
AvaII GGWCC 2 cut(s) 63, 171
BaeGI GKGCMC 1 cut(s) 12
BamHI GGATCC 1 cut(s) 35
BccI CCATC 3 cut(s) 84, 122, 182
BcoDI GTCTC 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 63, 171
BmgT120I GGNCC 3 cut(s) 63, 71, 171
BmiI GGNNCC 2 cut(s) 37, 172
Bse1I ACTGG 2 cut(s) 39, 189
BseGI GGATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 39, 189
BseRI GAGGAG 1 cut(s) 253
BseSI GKGCMC 1 cut(s) 12
BshFI GGCC 1 cut(s) 73
BslFI GGGAC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 35, 110, 151
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 37, 172
BspPI GGATC 3 cut(s) 30, 43, 105
BsrI ACTGG 2 cut(s) 39, 189
BssMI GATC 3 cut(s) 35, 110, 151
Bst4CI ACNGT 3 cut(s) 122, 137, 248
BstDEI CTNAG 2 cut(s) 241, 273
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 3 cut(s) 38, 113, 154
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 35, 110, 151
BstNSI RCATGY 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 142, 182, 253
Cfr13I GGNCC 3 cut(s) 63, 71, 171
CviAII CATG 2 cut(s) 131, 237
CviJI RGCY 5 cut(s) 51, 73, 108, 195, 256
CviKI_1 RGCY 5 cut(s) 51, 73, 108, 195, 256
DdeI CTNAG 2 cut(s) 241, 273
DpnI GATC 3 cut(s) 37, 112, 153
DpnII GATC 3 cut(s) 35, 110, 151
Eco47I GGWCC 2 cut(s) 63, 171
Eco57I CTGAAG 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 71, 171
FaeI CATG 2 cut(s) 134, 240
FaiI YATR 7 cut(s) 48, 59, 61, 132, 156, 220, 238
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 130, 236
FauNDI CATATG 1 cut(s) 59
FokI GGATG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 134, 240
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 122, 137, 248
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 241, 273
Hsp92II CATG 2 cut(s) 134, 240
Kzo9I GATC 3 cut(s) 35, 110, 151
LpnPI CCDG 3 cut(s) 52, 79, 170
MalI GATC 3 cut(s) 37, 112, 153
MboI GATC 3 cut(s) 35, 110, 151
MboII GAAGA 3 cut(s) 210, 222, 234
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 177
MnlI CCTC 4 cut(s) 62, 154, 184, 274
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 135
NdeI CATATG 1 cut(s) 59
NdeII GATC 3 cut(s) 35, 110, 151
NlaIII CATG 2 cut(s) 134, 240
NlaIV GGNNCC 2 cut(s) 37, 172
NspI RCATGY 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 37, 172
PspPI GGNCC 3 cut(s) 63, 71, 171
PspPPI RGGWCCY 1 cut(s) 171
PsuI RGATCY 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 3 cut(s) 35, 110, 151
Sau96I GGNCC 3 cut(s) 63, 71, 171
SduI GDGCHC 1 cut(s) 12
SetI ASST 3 cut(s) 53, 176, 258
SinI GGWCC 2 cut(s) 63, 171
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 1 cut(s) 177
TaaI ACNGT 3 cut(s) 122, 137, 248
TasI AATT 1 cut(s) 177
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 3 cut(s) 142, 189, 253
TspDTI ATGAA 4 cut(s) 223, 229, 235, 247
TspRI CASTG 3 cut(s) 142, 189, 253
VpaK11BI GGWCC 2 cut(s) 63, 171
XceI RCATGY 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.