Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0030999

Physical Location & Seq

Genomic Coordinates Forward (+)

413297 .. 413644

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000091.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggtatcggaatcggacctcctgacccggctccgggaaatcctcggctcttcggacctcgacaccgcaaccgccggcagcgtccgccgcgagctcgagaaacatttcggggccgatctatccgaccggaaagcctttatcagggaccaaatcgacatttacctcgagagccaggtcgccgatccccaggacgacgaagacgatgcggcggcggcgccggaggaggaggtcggtgaaggctccgagaatgccgagcaaaacgacgacgttaaagtagaagatgatgttgaagaagaagaagaagatgatgaggaaccagtaggcaaagctaaacggaaaaaagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

115

Amino Acids

12.77

Weight (kDa)

4.08

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030999)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000050.1_g000091
rosa_samantha	Rh6AG102800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	90
AciI	CCGC	7 cut(s)	66, 72, 85, 88, 206, 209, 212
AclWI	GGATC	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	33, 34, 141
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	171, 186
AluBI	AGCT	2 cut(s)	94, 329
AluI	AGCT	2 cut(s)	94, 329
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	2 cut(s)	95, 164
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	4 cut(s)	16, 55, 111, 145
AsuC2I	CCSGG	2 cut(s)	28, 35
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	2 cut(s)	95, 164
AvaII	GGWCC	3 cut(s)	16, 55, 145
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	2 cut(s)	173, 188
BcnI	CCSGG	2 cut(s)	28, 35
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
BlsI	GCNGC	5 cut(s)	80, 89, 208, 211, 214
Bme1390I	CCNGG	4 cut(s)	28, 35, 173, 188
Bme18I	GGWCC	3 cut(s)	16, 55, 145
BmeT110I	CYCGRG	2 cut(s)	95, 164
BmgT120I	GGNCC	4 cut(s)	16, 55, 111, 145
BmiI	GGNNCC	6 cut(s)	32, 112, 146, 216, 241, 315
BmrFI	CCNGG	4 cut(s)	28, 35, 173, 188
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	28, 35
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	43, 186
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 34, 141
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	173, 188
BseDI	CCNNGG	2 cut(s)	43, 186
BseLI	CCNNNNNNNGG	3 cut(s)	33, 34, 141
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	236, 239
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	2 cut(s)	95, 164
BsiSI	CCGG	5 cut(s)	28, 34, 75, 127, 218
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	33, 34, 141
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	2 cut(s)	95, 164
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	115, 181
BspACI	CCGC	7 cut(s)	66, 72, 85, 88, 206, 209, 212
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	6 cut(s)	32, 112, 146, 216, 241, 315
BspPI	GGATC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	43, 186
BssMI	GATC	2 cut(s)	115, 181
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	173, 188
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	76, 92
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	118, 184
BstMBI	GATC	2 cut(s)	115, 181
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 87, 212
BstNI	CCWGG	2 cut(s)	173, 188
BstSCI	CCNGG	4 cut(s)	26, 33, 171, 186
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	76, 92
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	16, 55, 111, 145
CseI	GACGC	1 cut(s)	70
CviJI	RGCY	8 cut(s)	31, 48, 94, 113, 134, 171, 240, 329
CviKI_1	RGCY	8 cut(s)	31, 48, 94, 113, 134, 171, 240, 329
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	2 cut(s)	117, 183
DpnII	GATC	2 cut(s)	115, 181
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	16, 55, 145
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	95, 164
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	171, 186
EcoT38I	GRGCYC	1 cut(s)	96
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
FaqI	GGGAC	1 cut(s)	158
Fnu4HI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	5 cut(s)	28, 34, 75, 127, 218
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	5 cut(s)	28, 34, 75, 127, 218
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	5 cut(s)	10, 16, 55, 124, 244
Hpy188III	TCNNGA	3 cut(s)	22, 97, 166
Hpy99I	CGWCG	3 cut(s)	197, 266, 269
HpyAV	CCTTC	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 87, 212
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	215
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	115, 181
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	36, 245
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	267
MalI	GATC	2 cut(s)	117, 183
MboI	GATC	2 cut(s)	115, 181
MboII	GAAGA	8 cut(s)	42, 209, 290, 302, 305, 308, 311, 314
MhlI	GDGCHC	1 cut(s)	96
Mly113I	GGCGCC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	29, 53, 68, 173, 214, 217, 220, 304
MroNI	GCCGGC	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	270
MspI	CCGG	5 cut(s)	28, 34, 75, 127, 218
MspR9I	CCNGG	4 cut(s)	28, 35, 173, 188
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	173, 188
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	84, 87, 212
NaeI	GCCGGC	1 cut(s)	76
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	2 cut(s)	28, 35
NdeII	GATC	2 cut(s)	115, 181
NgoMIV	GCCGGC	1 cut(s)	74
NlaIV	GGNNCC	6 cut(s)	32, 112, 146, 216, 241, 315
NmeAIII	GCCGAG	2 cut(s)	24, 277
PaeR7I	CTCGAG	2 cut(s)	95, 164
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	80, 89, 208, 211, 214
PluTI	GGCGCC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	171, 186
PspGI	CCWGG	2 cut(s)	171, 186
PspN4I	GGNNCC	6 cut(s)	32, 112, 146, 216, 241, 315
PspPI	GGNCC	4 cut(s)	16, 55, 111, 145
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
Sau3AI	GATC	2 cut(s)	115, 181
Sau96I	GGNCC	4 cut(s)	16, 55, 111, 145
ScrFI	CCNGG	4 cut(s)	28, 35, 173, 188
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	21, 60, 96, 165, 177, 231, 270, 331
SfaNI	GCATC	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	2 cut(s)	95, 164
SinI	GGWCC	3 cut(s)	16, 55, 145
SlaI	CTCGAG	2 cut(s)	95, 164
SmlI	CTYRAG	2 cut(s)	95, 164
SmoI	CTYRAG	2 cut(s)	95, 164
SsiI	CCGC	7 cut(s)	66, 72, 85, 88, 206, 209, 212
SspDI	GGCGCC	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	26, 33, 171, 186
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	60, 96, 153, 165
TauI	GCSGC	4 cut(s)	90, 209, 212, 215
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	1 cut(s)	78
VpaK11BI	GGWCC	3 cut(s)	16, 55, 145
XagI	CCTNNNNNAGG	1 cut(s)	139
XhoI	CTCGAG	2 cut(s)	95, 164
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.