Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000059.1

Orthogroup ID

OG0031001

Physical Location & Seq

Genomic Coordinates Forward (+)

116163 .. 117098

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgaaatgcccttcaccatacccactctgcatcaccagcaatatcttagccaccccattgctcttccctacacactccctagccctcttatcccccaacatgcaacacacgctccacaaaaccgccacgccgtcctccgtcgccgccatcgaccccttcatcagcctctccgccaccgccgccacgcatttcggctccccgcttatctcggacctgccctccgcgcacgtggcaatcttggacaacagcttcatcgccttctccgccagggaaacgctgacgtcagggttcgagagggtttccgttatgaattggacgagtccgaaccggacgagttcggatttgactgaccgggtcaccgacaacgagaccaagcacgagaaaacgacgtcgtgcaagctccgatcggtttccgaggtcaacaggtcgttcagtgcggtcaacagtccctctttctcggccattaatcgtttcgagtcggtgacccggtcagtcaaatccgaactcgtccggttcggactcgtccaattcataacggaaaccctctcgaaccctgacgtcagcgtttccctggcggagaaggcgatgaagctgttgtccaagattgccacgtgcgcggagggcaggtccgagataagcggggagccgaaatgcgtggcggcggtggcggagaggctgatgaaggggtcgatggcggcgacggaggacggcgtggcggttttgtggagcgtgtgttgcatgttgggggataagagggctagggagtgtgtagggaagagcaatggggtggctaagatattgctggtgatgcagagtgggtatggtgaagggcatttcatgaggaggatgtgtggggatttgatgaaggttttgagtgttgggttggggatggggttgagctatgacaccatgaccaaacatatcatgccttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

311

Amino Acids

33.49

Weight (kDa)

8.51

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	151 - 295	4.7e-32	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031001)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8070654.1_g000001 Rmu_ssc0000059.1_g000025

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	284, 392, 561
Acc36I	ACCTGC	2 cut(s)	222, 615
AccII	CGCG	2 cut(s)	224, 617
AcoI	YGGCCR	1 cut(s)	459
AcvI	CACGTG	2 cut(s)	229, 612
AcyI	GRCGYC	3 cut(s)	281, 389, 558
AjnI	CCWGG	2 cut(s)	266, 570
AluBI	AGCT	4 cut(s)	249, 400, 592, 900
AluI	AGCT	4 cut(s)	249, 400, 592, 900
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	459
AseI	ATTAAT	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	226, 617
AspS9I	GGNCC	2 cut(s)	211, 627
AsuC2I	CCSGG	2 cut(s)	353, 487
AsuHPI	GGTGA	6 cut(s)	6, 25, 349, 493, 817, 836
AvaII	GGWCC	2 cut(s)	211, 627
BauI	CACGAG	1 cut(s)	377
BbrPI	CACGTG	2 cut(s)	229, 612
BccI	CCATC	3 cut(s)	155, 685, 883
BceAI	ACGGC	2 cut(s)	115, 724
BciT130I	CCWGG	2 cut(s)	268, 572
BcnI	CCSGG	2 cut(s)	353, 487
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	80, 759
BfuAI	ACCTGC	2 cut(s)	222, 615
BisI	GCNGC	4 cut(s)	144, 180, 660, 696
BlsI	GCNGC	4 cut(s)	145, 181, 661, 697
Bme1390I	CCNGG	4 cut(s)	268, 353, 487, 572
Bme18I	GGWCC	2 cut(s)	211, 627
BmgT120I	GGNCC	2 cut(s)	211, 627
BmiI	GGNNCC	2 cut(s)	196, 645
BmrFI	CCNGG	4 cut(s)	268, 353, 487, 572
BmsI	GCATC	2 cut(s)	39, 798
BpuMI	CCSGG	2 cut(s)	353, 487
BsaAI	YACGTR	2 cut(s)	229, 612
BsaHI	GRCGYC	3 cut(s)	281, 389, 558
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	267, 414, 570
BsaWI	WCCGGW	2 cut(s)	327, 510
Bse3DI	GCAATG	2 cut(s)	56, 787
BseBI	CCWGG	2 cut(s)	268, 572
BseDI	CCNNGG	3 cut(s)	267, 414, 570
BseGI	GGATG	2 cut(s)	852, 894
BseMI	GCAATG	2 cut(s)	56, 787
BseRI	GAGGAG	1 cut(s)	856
Bsh1236I	CGCG	2 cut(s)	224, 617
Bsh1285I	CGRYCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	461
BsiEI	CGRYCG	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	328, 352, 487, 511
BslFI	GGGAC	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	461
BspFNI	CGCG	2 cut(s)	224, 617
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	2 cut(s)	196, 645
BspMI	ACCTGC	2 cut(s)	222, 615
BspQI	GCTCTTC	2 cut(s)	68, 770
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	56, 787
BssECI	CCNNGG	3 cut(s)	267, 414, 570
BssMI	GATC	1 cut(s)	404
BssNI	GRCGYC	3 cut(s)	281, 389, 558
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	268, 572
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	2 cut(s)	68, 770
BstACI	GRCGYC	3 cut(s)	281, 389, 558
BstBAI	YACGTR	2 cut(s)	229, 612
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	46, 792
BstEII	GGTNACC	2 cut(s)	355, 481
BstF5I	GGATG	2 cut(s)	852, 894
BstFNI	CGCG	2 cut(s)	224, 617
BstHHI	GCGC	2 cut(s)	226, 617
BstKTI	GATC	1 cut(s)	407
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	404
BstMCI	CGRYCG	1 cut(s)	407
BstNI	CCWGG	2 cut(s)	268, 572
BstNSI	RCATGY	2 cut(s)	103, 742
BstPI	GGTNACC	2 cut(s)	355, 481
BstSCI	CCNGG	4 cut(s)	266, 351, 485, 570
BstUI	CGCG	2 cut(s)	224, 617
BsuRI	GGCC	1 cut(s)	461
BtgZI	GCGATG	2 cut(s)	238, 599
BtsCI	GGATG	2 cut(s)	852, 894
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	2 cut(s)	222, 615
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	2 cut(s)	226, 617
Cfr13I	GGNCC	2 cut(s)	211, 627
CviAII	CATG	5 cut(s)	100, 739, 838, 910, 925
DdeI	CTNAG	2 cut(s)	46, 792
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	68, 770
EarI	CTCTTC	2 cut(s)	68, 770
EciI	GGCGGA	4 cut(s)	160, 253, 590, 683
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	211, 627
Eco72I	CACGTG	2 cut(s)	229, 612
Eco91I	GGTNACC	2 cut(s)	355, 481
EcoO65I	GGTNACC	2 cut(s)	355, 481
EcoRII	CCWGG	2 cut(s)	266, 570
FaeI	CATG	5 cut(s)	103, 742, 841, 913, 928
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	5 cut(s)	99, 738, 837, 909, 924
FauI	CCCGC	2 cut(s)	207, 632
Fnu4HI	GCNGC	4 cut(s)	144, 180, 660, 696
FokI	GGATG	2 cut(s)	859, 901
Fsp4HI	GCNGC	4 cut(s)	144, 180, 660, 696
FspBI	CTAG	2 cut(s)	80, 759
GlaI	GCGC	2 cut(s)	225, 616
GluI	GCNGC	4 cut(s)	144, 180, 660, 696
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	4 cut(s)	328, 352, 487, 511
HhaI	GCGC	2 cut(s)	226, 617
Hin1I	GRCGYC	3 cut(s)	281, 389, 558
Hin1II	CATG	5 cut(s)	103, 742, 841, 913, 928
Hin6I	GCGC	2 cut(s)	224, 615
HinP1I	GCGC	2 cut(s)	224, 615
HincII	GTYRAC	2 cut(s)	421, 442
HindII	GTYRAC	2 cut(s)	421, 442
HinfI	GANTC	3 cut(s)	319, 476, 519
HpaII	CCGG	4 cut(s)	328, 352, 487, 511
HphI	GGTGA	6 cut(s)	6, 25, 349, 493, 817, 836
Hpy166II	GTNNAC	2 cut(s)	421, 442
Hpy188I	TCNGA	8 cut(s)	211, 324, 340, 404, 415, 502, 518, 631
Hpy188III	TCNNGA	3 cut(s)	292, 547, 838
Hpy8I	GTNNAC	2 cut(s)	421, 442
Hpy99I	CGWCG	4 cut(s)	143, 391, 394, 703
HpyAV	CCTTC	7 cut(s)	21, 166, 268, 574, 676, 821, 859
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	5 cut(s)	228, 281, 389, 558, 611
HpyCH4V	TGCA	5 cut(s)	30, 103, 396, 738, 811
HpyF3I	CTNAG	2 cut(s)	46, 792
HpySE526I	ACGT	5 cut(s)	228, 281, 389, 558, 611
Hsp92I	GRCGYC	3 cut(s)	281, 389, 558
Hsp92II	CATG	5 cut(s)	103, 742, 841, 913, 928
HspAI	GCGC	2 cut(s)	224, 615
Kzo9I	GATC	1 cut(s)	404
LguI	GCTCTTC	2 cut(s)	68, 770
LmnI	GCTCC	5 cut(s)	117, 200, 405, 643, 726
LweI	GCATC	2 cut(s)	39, 798
MaeI	CTAG	2 cut(s)	80, 759
MaeII	ACGT	5 cut(s)	228, 281, 389, 558, 611
MaeIII	GTNAC	2 cut(s)	355, 481
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	2 cut(s)	55, 787
MluCI	AATT	2 cut(s)	310, 527
MlyI	GAGTC	3 cut(s)	328, 485, 513
MseI	TTAA	1 cut(s)	465
MspI	CCGG	4 cut(s)	328, 352, 487, 511
MspR9I	CCNGG	4 cut(s)	268, 353, 487, 572
MvaI	CCWGG	2 cut(s)	268, 572
MvnI	CGCG	2 cut(s)	224, 617
NciI	CCSGG	2 cut(s)	353, 487
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	5 cut(s)	103, 742, 841, 913, 928
NlaIV	GGNNCC	2 cut(s)	196, 645
NmeAIII	GCCGAG	1 cut(s)	437
NmuCI	GTSAC	2 cut(s)	355, 481
NspI	RCATGY	2 cut(s)	103, 742
PagI	TCATGA	1 cut(s)	837
PciSI	GCTCTTC	2 cut(s)	68, 770
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 695
PflFI	GACNNNGTC	2 cut(s)	353, 487
PkrI	GCNGC	4 cut(s)	145, 181, 661, 697
Ple19I	CGATCG	1 cut(s)	407
PleI	GAGTC	3 cut(s)	327, 484, 513
PmaCI	CACGTG	2 cut(s)	229, 612
PmlI	CACGTG	2 cut(s)	229, 612
PpsI	GAGTC	3 cut(s)	327, 484, 513
Ppu21I	YACGTR	2 cut(s)	229, 612
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	266, 570
PspCI	CACGTG	2 cut(s)	229, 612
PspEI	GGTNACC	2 cut(s)	355, 481
PspGI	CCWGG	2 cut(s)	266, 570
PspN4I	GGNNCC	2 cut(s)	196, 645
PspPI	GGNCC	2 cut(s)	211, 627
PsyI	GACNNNGTC	2 cut(s)	353, 487
PvuI	CGATCG	1 cut(s)	407
SapI	GCTCTTC	2 cut(s)	68, 770
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	4 cut(s)	144, 180, 660, 696
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	2 cut(s)	211, 627
SchI	GAGTC	3 cut(s)	328, 485, 513
ScrFI	CCNGG	4 cut(s)	268, 353, 487, 572
SfaNI	GCATC	2 cut(s)	39, 798
SinI	GGWCC	2 cut(s)	211, 627
Sse9I	AATT	2 cut(s)	310, 527
SspMI	CTAG	2 cut(s)	80, 759
StyD4I	CCNGG	4 cut(s)	266, 351, 485, 570
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	5 cut(s)	231, 284, 392, 561, 614
TaqI	TCGA	5 cut(s)	150, 291, 474, 548, 689
TasI	AATT	2 cut(s)	310, 527
TauI	GCSGC	4 cut(s)	146, 182, 662, 698
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	355, 481
Tsp45I	GTSAC	2 cut(s)	355, 481
TspDTI	ATGAA	9 cut(s)	17, 148, 241, 323, 520, 602, 695, 826, 878
TspGWI	ACGGA	4 cut(s)	127, 292, 551, 716
TspRI	CASTG	1 cut(s)	439
Tth111I	GACNNNGTC	2 cut(s)	353, 487
VpaK11BI	GGWCC	2 cut(s)	211, 627
VspI	ATTAAT	1 cut(s)	465
XceI	RCATGY	2 cut(s)	103, 742
XspI	CTAG	2 cut(s)	80, 759
ZraI	GACGTC	3 cut(s)	282, 390, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.