Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000136.1

Orthogroup ID

OG0029554

Physical Location & Seq

Genomic Coordinates Reverse (-)

71523 .. 73659

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgattactgcctacatggactttgggttggtggggttggctgtggagatgtttgatcagatgccagagaggaattgtttttcttataatgctctaatggctggcttttgtcgaaatggggaaggtttaagggcattggaattatttatgagaatgtttaaaagcagtaagaagatagctcaaggacagaaagaagatagttcaggccgattggaaccgattggtaccgaaccgatcggattcgggcctaatcggcatgttcccgagccgagccaaaccgatcccaggcctattttttatcaaccagcctccgaccactcagggtcaggctccgaccaaccaaggtcaggatccaacctcctccaagactactccttcctcggccccaacaccctcggcctcctccccctcctcatccacatccgactctcccccctcgtccccgaccagctccgctccatcggctccaccagcctcaaccccatcatcaatcgcctcctcatccacatactaggagatcgtcgccttcgaccactatcaccaggaaacgacgacgacgtggctttactgccgctcgatcccatcttctctctctctcccttctccagattcaatgcgcctagaaatgcgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

211

Amino Acids

23.29

Weight (kDa)

6.42

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	27 - 54	1.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0379071
rosa_multiflora	Rmu_ssc0000136.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	2 cut(s)	456, 574
AciI	CCGC	2 cut(s)	454, 572
AclWI	GGATC	4 cut(s)	275, 345, 358, 572
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	285, 347
AgsI	TTSAA	1 cut(s)	613
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	2 cut(s)	284, 541
AluBI	AGCT	2 cut(s)	179, 451
AluI	AGCT	2 cut(s)	179, 451
AlwI	GGATC	4 cut(s)	275, 345, 358, 572
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	5 cut(s)	205, 245, 287, 382, 397
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	2 cut(s)	245, 383
AsuHPI	GGTGA	1 cut(s)	531
AvaI	CYCGRG	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	224
BccI	CCATC	3 cut(s)	467, 491, 590
BciT130I	CCWGG	2 cut(s)	286, 543
BclI	TGATCA	1 cut(s)	55
BfaI	CTAG	2 cut(s)	512, 621
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	572
BlsI	GCNGC	1 cut(s)	573
Bme1390I	CCNGG	2 cut(s)	286, 543
BmeT110I	CYCGRG	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	245, 383
BmiI	GGNNCC	6 cut(s)	216, 226, 331, 352, 385, 466
BmrFI	CCNGG	2 cut(s)	286, 543
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	284, 341, 379, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 347
BseBI	CCWGG	2 cut(s)	286, 543
BseDI	CCNNGG	4 cut(s)	284, 341, 379, 394
BseGI	GGATG	3 cut(s)	414, 420, 501
BseLI	CCNNNNNNNGG	2 cut(s)	285, 347
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	4 cut(s)	350, 392, 401, 488
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	5 cut(s)	207, 247, 289, 384, 399
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	285, 347
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	5 cut(s)	207, 247, 289, 384, 399
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
BspACI	CCGC	2 cut(s)	454, 572
BspANI	GGCC	5 cut(s)	207, 247, 289, 384, 399
BspCNI	CTCAG	1 cut(s)	332
BspLI	GGNNCC	6 cut(s)	216, 226, 331, 352, 385, 466
BspPI	GGATC	4 cut(s)	275, 345, 358, 572
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	2 cut(s)	456, 574
BssECI	CCNNGG	4 cut(s)	284, 341, 379, 394
BssMI	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	286, 543
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	414, 420, 501
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	6 cut(s)	58, 237, 283, 353, 520, 580
BstMBI	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 253, 462, 471
BstNI	CCWGG	2 cut(s)	286, 543
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	284, 541
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	5 cut(s)	207, 247, 289, 384, 399
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	414, 420, 501
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	619
Cfr13I	GGNCC	2 cut(s)	245, 383
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	2 cut(s)	16, 257
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	6 cut(s)	57, 236, 282, 352, 519, 579
DpnII	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
DraI	TTTAAA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	284, 541
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	19, 260
FaiI	YATR	5 cut(s)	17, 87, 149, 258, 509
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	15, 256
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	572
FokI	GGATG	3 cut(s)	401, 407, 488
Fsp4HI	GCNGC	1 cut(s)	572
FspBI	CTAG	2 cut(s)	512, 621
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	589
HaeIII	GGCC	5 cut(s)	207, 247, 289, 384, 399
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	19, 260
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HinfI	GANTC	3 cut(s)	240, 426, 609
HphI	GGTGA	1 cut(s)	531
Hpy188I	TCNGA	5 cut(s)	60, 239, 313, 334, 425
Hpy188III	TCNNGA	3 cut(s)	263, 348, 606
Hpy99I	CGWCG	4 cut(s)	525, 554, 557, 560
HpyAV	CCTTC	4 cut(s)	116, 385, 536, 610
HpyCH4IV	ACGT	1 cut(s)	558
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 253, 462, 471
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	2 cut(s)	19, 260
HspAI	GCGC	1 cut(s)	617
KpnI	GGTACC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
LmnI	GCTCC	4 cut(s)	335, 456, 461, 470
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	512, 621
MaeII	ACGT	1 cut(s)	558
MalI	GATC	6 cut(s)	57, 236, 282, 352, 519, 579
MbiI	CCGCTC	2 cut(s)	456, 574
MboI	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
MboII	GAAGA	3 cut(s)	184, 206, 577
MflI	RGATCY	1 cut(s)	350
MluCI	AATT	2 cut(s)	73, 140
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	4 cut(s)	336, 357, 378, 448
MseI	TTAA	2 cut(s)	128, 159
MspR9I	CCNGG	2 cut(s)	286, 543
MvaI	CCWGG	2 cut(s)	286, 543
MwoI	GCNNNNNNNGC	4 cut(s)	98, 253, 462, 471
NdeII	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
NlaIII	CATG	2 cut(s)	19, 260
NlaIV	GGNNCC	6 cut(s)	216, 226, 331, 352, 385, 466
NmeAIII	GCCGAG	3 cut(s)	294, 360, 375
NspI	RCATGY	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	2 cut(s)	526, 555
PfeI	GAWTC	2 cut(s)	240, 609
PkrI	GCNGC	1 cut(s)	573
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	284, 541
PspGI	CCWGG	2 cut(s)	284, 541
PspN4I	GGNNCC	6 cut(s)	216, 226, 331, 352, 385, 466
PspPI	GGNCC	2 cut(s)	245, 383
PsuI	RGATCY	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	128, 159
SatI	GCNGC	1 cut(s)	572
Sau3AI	GATC	6 cut(s)	55, 234, 280, 350, 517, 577
Sau96I	GGNCC	2 cut(s)	245, 383
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	286, 543
SetI	ASST	6 cut(s)	127, 181, 347, 360, 453, 561
SfaNI	GCATC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	73, 140
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	2 cut(s)	454, 572
SspMI	CTAG	2 cut(s)	512, 621
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	284, 541
StyI	CCWWGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	3 cut(s)	112, 529, 576
TasI	AATT	2 cut(s)	73, 140
TauI	GCSGC	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	240, 609
Tru1I	TTAA	2 cut(s)	128, 159
Tru9I	TTAA	2 cut(s)	128, 159
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	2 cut(s)	512, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.