Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000151.1

Orthogroup ID

OG0027808

Physical Location & Seq

Genomic Coordinates Forward (+)

40691 .. 45945

Gene Structure 5255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000151.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgggcactgaagcttttgaaatgagtcttgtattggtgctcttgacgatccttacatgctcagcaacatcttcagcaaccgatcatatctacaatgtaggagataatgtccccttgttcgtcaacaaaatcggtcctttgaacaaccccagcgagacctatcagtactatgatttgcctttctgccttccagatgccagttcaaaacaggtgtgcatcttatttctgttagcatgttttggagtcctctatccctacaatcgtggagcactactcacttctcttgtcttcatctatgctcttacttctatggttgccggctacagtgctgctgcttttcacaatcaattttctgtgaccggatgggaaaggagtgttcttctaacagggattctctacttgggcccattcttcgtgatggtgtctttccttaatacagtagctatatcctatggggccacggctgcacttccttttggaaccatcctagtgattcttatcatatatgcatttcttgccatcccattgcttggtttgggtgggctgattggatactgtgtaaggtctgaatttcaagcgccttgtgctacaaagcaaattccaagagagattccgtcattagcttggtatagaagaactccttgtcaaatgtttattggaggtctcttgccttttagtgcaattgcccttcagttacaccacctgtatgcaagcatgtggggctacaaaatctacactcttcctggaattctgtttgttacatttatcatcctcatcgtactgactgcaatcttgactattggtttgacctatattcaactttcagttgaagaccatgagtggtggtggaggtccgtgttgtgtgggggatctacggctattttcatgtttgcctatagcatttatttctacgtcagatcaaacatgactggtttcttgcaactatccttctttattggctataatgctagcatatgctatgcattcttcttgatgcttggtacaattagtttcagggtttcctcggctggaatggctggaggaacaggcacaggtggggctcctgtagttgcaaaaatggcaaagtctctgggtatcttgactattagcattgtcacgacaccattcacctttgaggaagaaggcgtactattcaagctcttgaaggaattacagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

393

Amino Acids

43.13

Weight (kDa)

6.92

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24860
rosa_multiflora	Rmu_ssc0000151.1_g000012

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	530
AclWI	GGATC	2 cut(s)	43, 877
AcsI	RAATTY	3 cut(s)	569, 597, 747
AcuI	CTGAAG	3 cut(s)	30, 57, 674
AfaI	GTAC	4 cut(s)	167, 780, 1003, 1149
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	8 cut(s)	20, 142, 204, 575, 818, 830, 1156, 1165
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	5 cut(s)	14, 443, 623, 1159, 1177
AluI	AGCT	5 cut(s)	14, 443, 623, 1159, 1177
Alw21I	GWGCWC	2 cut(s)	42, 271
Alw26I	GTCTC	3 cut(s)	149, 668, 1092
AlwI	GGATC	2 cut(s)	43, 877
AoxI	GGCC	2 cut(s)	403, 456
ApaI	GGGCCC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	329, 332, 464
ApoI	RAATTY	3 cut(s)	569, 597, 747
ArsI	GACNNNNNNTTYG	2 cut(s)	787, 819
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	5 cut(s)	134, 403, 404, 456, 852
AsuHPI	GGTGA	1 cut(s)	1120
AsuNHI	GCTAGC	1 cut(s)	968
AvaII	GGWCC	2 cut(s)	134, 852
BaeGI	GKGCMC	2 cut(s)	8, 407
BanII	GRGCYC	2 cut(s)	407, 1063
BarI	GAAGNNNNNNTAC	2 cut(s)	1131, 1163
BbsI	GAAGAC	2 cut(s)	280, 837
Bbv12I	GWGCWC	2 cut(s)	42, 271
BbvI	GCAGC	3 cut(s)	316, 319, 451
BccI	CCATC	4 cut(s)	357, 412, 491, 527
BceAI	ACGGC	2 cut(s)	477, 891
BciT130I	CCWGG	1 cut(s)	744
BciVI	GTATCC	1 cut(s)	545
BcoDI	GTCTC	3 cut(s)	149, 668, 1092
BfaI	CTAG	2 cut(s)	488, 969
BfmI	CTRYAG	3 cut(s)	322, 895, 1065
BfoI	RGCGCY	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	3 cut(s)	330, 333, 465
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	3 cut(s)	331, 334, 466
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	2 cut(s)	134, 852
BmgT120I	GGNCC	5 cut(s)	134, 403, 404, 456, 852
BmiI	GGNNCC	4 cut(s)	405, 457, 481, 1062
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	3 cut(s)	184, 225, 984
BmtI	GCTAGC	1 cut(s)	972
BpiI	GAAGAC	2 cut(s)	280, 837
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	1 cut(s)	1059
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	497
BsaI	GGTCTC	2 cut(s)	149, 668
BsaJI	CCNNGG	2 cut(s)	459, 1023
BsaWI	WCCGGW	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	198, 934
Bse3DI	GCAATG	1 cut(s)	524
Bse8I	GATNNNNATC	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	459, 1023
BseGI	GGATG	4 cut(s)	368, 483, 519, 768
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	198, 934
BseSI	GKGCMC	2 cut(s)	8, 407
BseXI	GCAGC	3 cut(s)	316, 319, 451
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	405, 458
BsiHKAI	GWGCWC	2 cut(s)	42, 271
BsiSI	CCGG	2 cut(s)	318, 360
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	3 cut(s)	149, 668, 1092
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	2 cut(s)	405, 458
Bso31I	GGTCTC	2 cut(s)	149, 668
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	5 cut(s)	8, 42, 271, 407, 1063
Bsp143I	GATC	4 cut(s)	48, 82, 869, 917
Bsp1720I	GCTNAGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	405, 458
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	4 cut(s)	405, 457, 481, 1062
BspOI	GCTAGC	1 cut(s)	972
BspPI	GGATC	2 cut(s)	43, 877
BspTNI	GGTCTC	2 cut(s)	149, 668
BsrDI	GCAATG	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	198, 934
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	459, 1023
BssMI	GATC	4 cut(s)	48, 82, 869, 917
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	326, 439, 557
Bst6I	CTCTTC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	319, 712, 970
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	368, 483, 519, 768
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	51, 85, 872, 920
BstMAI	GTCTC	3 cut(s)	149, 668, 1092
BstMBI	GATC	4 cut(s)	48, 82, 869, 917
BstMWI	GCNNNNNNNGC	6 cut(s)	464, 515, 584, 720, 1034, 1079
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	3 cut(s)	60, 237, 718
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	3 cut(s)	322, 895, 1065
BstSLI	GKGCMC	2 cut(s)	8, 407
BstV1I	GCAGC	3 cut(s)	316, 319, 451
BstV2I	GAAGAC	2 cut(s)	280, 837
BstX2I	RGATCY	1 cut(s)	869
BstYI	RGATCY	1 cut(s)	869
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	405, 458
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	368, 483, 519, 768
BtsIMutI	CAGTG	2 cut(s)	6, 331
Cac8I	GCNNGC	3 cut(s)	319, 712, 970
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	5 cut(s)	134, 403, 404, 456, 852
Csp6I	GTAC	4 cut(s)	166, 779, 1002, 1148
CviAII	CATG	6 cut(s)	57, 234, 715, 836, 886, 925
CviQI	GTAC	4 cut(s)	166, 779, 1002, 1148
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	4 cut(s)	50, 84, 871, 919
DpnII	GATC	4 cut(s)	48, 82, 869, 917
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco24I	GRGCYC	2 cut(s)	407, 1063
Eco31I	GGTCTC	2 cut(s)	149, 668
Eco47I	GGWCC	2 cut(s)	134, 852
Eco57I	CTGAAG	3 cut(s)	30, 57, 674
EcoRI	GAATTC	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	742
EcoT22I	ATGCAT	2 cut(s)	511, 985
EcoT38I	GRGCYC	2 cut(s)	407, 1063
FaeI	CATG	6 cut(s)	60, 237, 718, 839, 889, 928
FalI	AAGNNNNNCTT	2 cut(s)	625, 657
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	6 cut(s)	56, 233, 714, 835, 885, 924
FauNDI	CATATG	1 cut(s)	974
Fnu4HI	GCNGC	3 cut(s)	330, 333, 465
FokI	GGATG	4 cut(s)	375, 470, 506, 755
FriOI	GRGCYC	2 cut(s)	407, 1063
Fsp4HI	GCNGC	3 cut(s)	330, 333, 465
FspBI	CTAG	2 cut(s)	488, 969
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	3 cut(s)	330, 333, 465
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	1059
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	405, 458
HapII	CCGG	2 cut(s)	318, 360
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	6 cut(s)	60, 237, 718, 839, 889, 928
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	5 cut(s)	25, 243, 391, 493, 610
HpaII	CCGG	2 cut(s)	318, 360
HphI	GGTGA	1 cut(s)	1120
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	568, 917, 1181
Hpy188III	TCNNGA	8 cut(s)	43, 191, 415, 793, 991, 1099, 1117, 1162
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	197, 698, 958, 1136, 1159
HpyCH4III	ACNGT	3 cut(s)	326, 439, 557
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	9 cut(s)	216, 467, 509, 680, 710, 788, 940, 983, 1073
HpyF10VI	GCNNNNNNNGC	6 cut(s)	464, 515, 584, 720, 1034, 1079
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	912
Hsp92II	CATG	6 cut(s)	60, 237, 718, 839, 889, 928
HspAI	GCGC	1 cut(s)	578
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	48, 82, 869, 917
LmnI	GCTCC	2 cut(s)	266, 1066
Lsp1109I	GCAGC	3 cut(s)	316, 319, 451
LweI	GCATC	3 cut(s)	184, 225, 984
MaeI	CTAG	2 cut(s)	488, 969
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	4 cut(s)	355, 693, 757, 1114
MalI	GATC	4 cut(s)	50, 84, 871, 919
MboI	GATC	4 cut(s)	48, 82, 869, 917
MboII	GAAGA	9 cut(s)	63, 280, 371, 403, 645, 731, 842, 979, 1151
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	869
MhlI	GDGCHC	5 cut(s)	8, 42, 271, 407, 1063
MluCI	AATT	7 cut(s)	347, 569, 597, 681, 747, 1005, 1169
MlyI	GAGTC	2 cut(s)	34, 252
MnlI	CCTC	7 cut(s)	257, 653, 782, 843, 1033, 1034, 1129
Mph1103I	ATGCAT	2 cut(s)	511, 985
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	2 cut(s)	488, 705
MspI	CCGG	2 cut(s)	318, 360
MspR9I	CCNGG	1 cut(s)	744
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	6 cut(s)	464, 515, 584, 720, 1034, 1079
NaeI	GCCGGC	1 cut(s)	319
NdeI	CATATG	1 cut(s)	974
NdeII	GATC	4 cut(s)	48, 82, 869, 917
NgoMIV	GCCGGC	1 cut(s)	317
NheI	GCTAGC	1 cut(s)	968
NlaIII	CATG	6 cut(s)	60, 237, 718, 839, 889, 928
NlaIV	GGNNCC	4 cut(s)	405, 457, 481, 1062
NmeAIII	GCCGAG	1 cut(s)	1004
NmuCI	GTSAC	2 cut(s)	355, 1114
NsiI	ATGCAT	2 cut(s)	511, 985
NspI	RCATGY	3 cut(s)	60, 237, 718
PctI	GAATGC	1 cut(s)	983
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	391, 493, 610
PflMI	CCANNNNNTGG	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	331, 334, 466
PleI	GAGTC	2 cut(s)	33, 251
PpsI	GAGTC	2 cut(s)	33, 251
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	4 cut(s)	405, 457, 481, 1062
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	5 cut(s)	134, 403, 404, 456, 852
PsuI	RGATCY	1 cut(s)	869
RsaI	GTAC	4 cut(s)	167, 780, 1003, 1149
RsaNI	GTAC	4 cut(s)	166, 779, 1002, 1148
RseI	CAYNNNNRTG	2 cut(s)	488, 705
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	330, 333, 465
Sau3AI	GATC	4 cut(s)	48, 82, 869, 917
Sau96I	GGNCC	5 cut(s)	134, 403, 404, 456, 852
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	34, 252
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	5 cut(s)	8, 42, 271, 407, 1063
SfaNI	GCATC	3 cut(s)	184, 225, 984
SfcI	CTRYAG	3 cut(s)	322, 895, 1065
SinI	GGWCC	2 cut(s)	134, 852
SmiMI	CAYNNNNRTG	2 cut(s)	488, 705
Sse9I	AATT	7 cut(s)	347, 569, 597, 681, 747, 1005, 1169
SspMI	CTAG	2 cut(s)	488, 969
StyD4I	CCNGG	1 cut(s)	742
TaaI	ACNGT	3 cut(s)	326, 439, 557
TaiI	ACGT	1 cut(s)	915
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	7 cut(s)	347, 569, 597, 681, 747, 1005, 1169
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	391, 493, 610
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	13, 331
TseFI	GTSAC	2 cut(s)	355, 1114
TseI	GCWGC	3 cut(s)	329, 332, 464
Tsp45I	GTSAC	2 cut(s)	355, 1114
TspDTI	ATGAA	2 cut(s)	280, 874
TspGWI	ACGGA	2 cut(s)	603, 844
TspRI	CASTG	2 cut(s)	13, 331
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	134, 852
XapI	RAATTY	3 cut(s)	569, 597, 747
XceI	RCATGY	3 cut(s)	60, 237, 718
XspI	CTAG	2 cut(s)	488, 969
ZrmI	AGTACT	1 cut(s)	167
Zsp2I	ATGCAT	2 cut(s)	511, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.