Rmu_ssc0000178.1_g000014

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000178.1
OG0031009
Physical Location & Seq
Forward (+)
57362 .. 60958
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
atggtattagaggcgtgtagtggtggcgtgctggtgcatgggaaaacaggtgggtcaacttctagcactgctagtagcaacggggtcaatactggtatgagggctagggtttctaccccgtgcccttcgttagtgtttcggtctccagtccctgaagttaaagttggtttggctgtaggcaagagaaacctcattatggattatgaaaaccttggcttggacctggtactgcaggcagaggctaattctggtagtatgaagagaaagagagggctacctattggcggtaagaataggcatttcaacaaagggaaaccattaaaaccattcaggattacacctccccataacaatgcagtagagcagctgctgacattacaagaagccatcactcaagttgaagcatttcttcgagctgggaatattatcctactgaagataagagccctcctatttgcagttcttcctcaggcatcggacaagattgttatactgctggttttcatggcagcaatgtttgcattcgtgcctccaagatatataatactgctagtatttttggaggcttttacaagggaaatgccatataggaaagaaagcagtgacaggtgggtgaggcggattagagaatggtggattcgcataccagcagctcctgtccagctcatcaaacctgaggataacaagaaaaagaaatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

233

Amino Acids

25.87

Weight (kDa)

10.43

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 112 - 224 2.2e-34 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031009)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0040221.1_g000001 Rmu_ssc0000178.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 285, 619
AcuI CTGAAG 2 cut(s) 174, 455
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 196, 217, 284
AgsI TTSAA 2 cut(s) 304, 401
AjnI CCWGG 1 cut(s) 222
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 367, 416, 653, 664
AluI AGCT 4 cut(s) 367, 416, 653, 664
Alw26I GTCTC 1 cut(s) 147
AlwNI CAGNNNCTG 3 cut(s) 152, 370, 656
ApeKI GCWGC 4 cut(s) 364, 367, 509, 650
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 625
AvaII GGWCC 1 cut(s) 220
AxyI CCTNAGG 2 cut(s) 468, 675
BaeGI GKGCMC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 448
BbvI GCAGC 4 cut(s) 354, 376, 521, 662
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 4 cut(s) 63, 72, 105, 551
BfmI CTRYAG 2 cut(s) 174, 230
BisI GCNGC 4 cut(s) 365, 368, 510, 651
BlsI GCNGC 4 cut(s) 366, 369, 511, 652
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 217, 284
Bse1I ACTGG 2 cut(s) 97, 146
Bse21I CCTNAGG 2 cut(s) 468, 675
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 196, 217, 284
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 482, 666
BseNI ACTGG 2 cut(s) 97, 146
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 4 cut(s) 354, 376, 521, 662
BseYI CCCAGC 1 cut(s) 416
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 3 cut(s) 196, 217, 284
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 125, 448
BspACI CCGC 2 cut(s) 285, 619
BspCNI CTCAG 2 cut(s) 481, 667
BspMAI CTGCAG 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 97, 146
BssECI CCNNGG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 29, 234
BstDEI CTNAG 2 cut(s) 468, 675
BstMAI GTCTC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 2 cut(s) 174, 230
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 354, 376, 521, 662
Bsu36I CCTNAGG 2 cut(s) 468, 675
BtsI GCAGTG 2 cut(s) 66, 607
BtsIMutI CAGTG 2 cut(s) 66, 607
Cac8I GCNNGC 2 cut(s) 29, 234
CaiI CAGNNNCTG 3 cut(s) 152, 370, 656
Cfr13I GGNCC 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 38, 505
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 468, 675
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 174, 455
Eco81I CCTNAGG 2 cut(s) 468, 675
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 41, 508
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 37, 504
Fnu4HI GCNGC 4 cut(s) 365, 368, 510, 651
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 4 cut(s) 365, 368, 510, 651
FspBI CTAG 4 cut(s) 63, 72, 105, 551
GluI GCNGC 4 cut(s) 365, 368, 510, 651
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 129
Hin1II CATG 2 cut(s) 41, 508
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 1 cut(s) 637
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 37, 232, 356, 458, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 2 cut(s) 468, 675
Hsp92II CATG 2 cut(s) 41, 508
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 4 cut(s) 354, 376, 521, 662
LweI GCATC 1 cut(s) 482
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 4 cut(s) 63, 72, 105, 551
MaeIII GTNAC 1 cut(s) 602
MboII GAAGA 4 cut(s) 271, 401, 448, 455
MhlI GDGCHC 2 cut(s) 125, 448
MluCI AATT 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 159, 320
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 518
NlaIII CATG 2 cut(s) 41, 508
NmuCI GTSAC 1 cut(s) 602
PctI GAATGC 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 637
PkrI GCNGC 4 cut(s) 366, 369, 511, 652
Psp6I CCWGG 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 234
PstNI CAGNNNCTG 3 cut(s) 152, 370, 656
PvuII CAGCTG 1 cut(s) 367
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 2 cut(s) 159, 320
SatI GCNGC 4 cut(s) 365, 368, 510, 651
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 125, 448
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 1 cut(s) 482
SfcI CTRYAG 2 cut(s) 174, 230
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 1 cut(s) 244
SsiI CCGC 2 cut(s) 285, 619
SspI AATATT 1 cut(s) 424
SspMI CTAG 4 cut(s) 63, 72, 105, 551
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 211
TaqI TCGA 1 cut(s) 412
TaqII GACCGA 1 cut(s) 129
TasI AATT 1 cut(s) 244
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 2 cut(s) 159, 320
Tru9I TTAA 2 cut(s) 159, 320
TscAI CASTG 2 cut(s) 73, 607
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 4 cut(s) 364, 367, 509, 650
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 3 cut(s) 219, 272, 493
TspRI CASTG 2 cut(s) 73, 607
VpaK11BI GGWCC 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 4 cut(s) 63, 72, 105, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.