Rmu_ssc0000183.1_g000021

Cell division cycle and apoptosis regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000183.1
OG0030200
Physical Location & Seq
Forward (+)
99734 .. 102341
2608 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atgacaattggtggtccatggaattccactgatggtggtgatccatcagttgatgatagcgctttaattcaaactacaataagaactgcaagaactgaaatcgttttcttaagatacactacaataggattgggaaagatggattctttagcccataaagagattattgcaaagtgggagtccagtggtacctgtactatccctctgttagctcttatagtacctccgcctattattccgttaaaaatgcctatgtggctgtcatgtgacactcatgacgtgtgggacgacaaactagagagagagagagatagagaggtggtttggttttatgttgggtttattgggacgcaacaagaactgctgctcacctcgttcgattggaaggaggcggccgggatcacatcggatcagactgatccgatctggaatgggtttcacagatgccttgctgtactcatcggcagaatggcttggaggtgcaggttcgaggtttgccagacgacgtcgaatatgtggcggcctagatcacatctgatcggattgatccgatctggactgggttcacagatccaagctggggatcgatttgcttggaggaggcggcacttttatttggcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBC1

Protein Analysis

207

Amino Acids

23.64

Weight (kDa)

6.95

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBC1 PF14443 1 - 33 1.3e-07 DBC1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030200)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0082441
rosa_multiflora Rmu_ssc0000183.1_g000021

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 474
Acc65I GGTACC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 4 cut(s) 227, 392, 520, 604
AclWI GGATC 7 cut(s) 35, 407, 413, 417, 541, 565, 591
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 4 cut(s) 190, 196, 222, 456
AfeI AGCGCT 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 580
AflII CTTAAG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 1 cut(s) 71
AjiI CACGTC 1 cut(s) 280
AluBI AGCT 2 cut(s) 212, 578
AluI AGCT 2 cut(s) 212, 578
AlwI GGATC 7 cut(s) 35, 407, 413, 417, 541, 565, 591
Aor51HI AGCGCT 1 cut(s) 61
AoxI GGCC 2 cut(s) 393, 521
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp718I GGTACC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 50, 361
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 351
BccI CCATC 3 cut(s) 26, 52, 133
BcnI CCSGG 1 cut(s) 397
BfaI CTAG 2 cut(s) 296, 525
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 474
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 4 cut(s) 365, 393, 521, 605
BlsI GCNGC 4 cut(s) 366, 394, 522, 606
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 397
BmrI ACTGGG 1 cut(s) 569
BmsI GCATC 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 586
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse1I ACTGG 2 cut(s) 183, 564
BseCI ATCGAT 1 cut(s) 586
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 580
BseNI ACTGG 2 cut(s) 183, 564
BseRI GAGGAG 1 cut(s) 613
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 502
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 2 cut(s) 395, 523
BshNI GGYRCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 586
BsiEI CGRYCG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 2 cut(s) 299, 361
BslI CCNNNNNNNGG 1 cut(s) 580
BsmFI GGGAC 2 cut(s) 299, 361
BsnI GGCC 2 cut(s) 395, 523
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 4 cut(s) 227, 392, 520, 604
BspANI GGCC 2 cut(s) 395, 523
BspDI ATCGAT 1 cut(s) 586
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 474
BspPI GGATC 7 cut(s) 35, 407, 413, 417, 541, 565, 591
BspT107I GGYRCC 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 109
BsrI ACTGG 2 cut(s) 183, 564
BssECI CCNNGG 1 cut(s) 17
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 506
BstAFI CTTAAG 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BstZI CGGCCG 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 586
BsuRI GGCC 2 cut(s) 395, 523
BsuTUI ATCGAT 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 17
BtrI CACGTC 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 27, 190
BveI ACCTGC 1 cut(s) 474
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 586
CseI GACGC 1 cut(s) 358
Csp6I GTAC 4 cut(s) 189, 195, 221, 455
CviAII CATG 3 cut(s) 18, 264, 275
CviJI RGCY 7 cut(s) 152, 212, 259, 395, 473, 523, 578
CviKI_1 RGCY 7 cut(s) 152, 212, 259, 395, 473, 523, 578
CviQI GTAC 4 cut(s) 189, 195, 221, 455
EaeI YGGCCR 1 cut(s) 393
EagI CGGCCG 1 cut(s) 393
EciI GGCGGA 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 61
Eco52I CGGCCG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 3 cut(s) 21, 267, 278
FaiI YATR 8 cut(s) 19, 156, 218, 254, 265, 276, 333, 515
FaqI GGGAC 2 cut(s) 299, 361
FatI CATG 3 cut(s) 17, 263, 274
Fnu4HI GCNGC 4 cut(s) 365, 393, 521, 605
Fsp4HI GCNGC 4 cut(s) 365, 393, 521, 605
FspBI CTAG 2 cut(s) 296, 525
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 365, 393, 521, 605
GsaI CCCAGC 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 2 cut(s) 395, 523
HapII CCGG 1 cut(s) 396
HgaI GACGC 1 cut(s) 358
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 3 cut(s) 21, 267, 278
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 2 cut(s) 143, 179
HpaII CCGG 1 cut(s) 396
HphI GGTGA 2 cut(s) 50, 361
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 6 cut(s) 409, 414, 423, 537, 542, 551
Hpy188III TCNNGA 3 cut(s) 275, 427, 555
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 2 cut(s) 508, 511
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 279, 506
HpyCH4V TGCA 3 cut(s) 89, 170, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpySE526I ACGT 2 cut(s) 279, 506
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 3 cut(s) 21, 267, 278
HspAI GCGC 1 cut(s) 60
KpnI GGTACC 1 cut(s) 192
LpnPI CCDG 9 cut(s) 196, 205, 409, 412, 469, 512, 540, 545, 564
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 434
MaeI CTAG 2 cut(s) 296, 525
MaeII ACGT 2 cut(s) 279, 506
MaeIII GTNAC 1 cut(s) 266
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 570
MluCI AATT 3 cut(s) 6, 22, 66
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 9 cut(s) 213, 234, 310, 382, 382, 471, 484, 591, 594
MseI TTAA 3 cut(s) 65, 110, 242
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 397
MunI CAATTG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 397
NcoI CCATGG 1 cut(s) 17
NlaIII CATG 3 cut(s) 21, 267, 278
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 266
PagI TCATGA 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 1 cut(s) 143
PflFI GACNNNGTC 1 cut(s) 505
PkrI GCNGC 4 cut(s) 366, 394, 522, 606
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 578
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 570
PsyI GACNNNGTC 1 cut(s) 505
RsaI GTAC 4 cut(s) 190, 196, 222, 456
RsaNI GTAC 4 cut(s) 189, 195, 221, 455
SaqAI TTAA 3 cut(s) 65, 110, 242
SatI GCNGC 4 cut(s) 365, 393, 521, 605
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 397
SfaNI GCATC 1 cut(s) 434
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 3 cut(s) 6, 22, 66
SsiI CCGC 4 cut(s) 227, 392, 520, 604
SspMI CTAG 2 cut(s) 296, 525
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 1 cut(s) 17
TaiI ACGT 2 cut(s) 282, 509
TaqI TCGA 4 cut(s) 378, 489, 509, 586
TasI AATT 3 cut(s) 6, 22, 66
TatI WGTACW 2 cut(s) 194, 454
TauI GCSGC 3 cut(s) 395, 523, 607
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 65, 110, 242
Tru9I TTAA 3 cut(s) 65, 110, 242
TscAI CASTG 2 cut(s) 34, 190
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 2 cut(s) 34, 190
Tth111I GACNNNGTC 1 cut(s) 505
Vha464I CTTAAG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 22
XspI CTAG 2 cut(s) 296, 525
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.