Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0025459

Physical Location & Seq

Genomic Coordinates Forward (+)

181212 .. 181457

Gene Structure 246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggctcatgaagaggcaagaaacttagactctgagaagcaaaggcttctcagtcagcacaaagagaagcacttcaccgccggcgagatcgtccgtgacatcatcatcggcgtatctgatggcctcaccgtccccttcgctctcgctgccggtctctccggtgcaaatgccacgtcctcgattgtcctaaccgctggagtcgccgaagtcgccgccggcgccatctccatgggacttggcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

81

Amino Acids

8.23

Weight (kDa)

5.44

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	31 - 81	1.6e-16	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0025459)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025219.1_g000003 Rmu_sc0031013.1_g000001 Rmu_ssc0000204.1_g000038

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	4 cut(s)	78, 192, 213, 240
AcyI	GRCGYC	1 cut(s)	219
AjiI	CACGTC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	67, 118
BanI	GGYRCC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	113, 230
BcoDI	GTCTC	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	2 cut(s)	147, 213
BlsI	GCNGC	2 cut(s)	148, 214
BmgBI	CACGTC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	158
Bse118I	RCCGGY	3 cut(s)	80, 149, 215
BseDI	CCNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	24, 64
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	81, 150, 159, 216
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	4 cut(s)	78, 192, 213, 240
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	25, 63
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	3 cut(s)	80, 149, 215
BssAI	RCCGGY	3 cut(s)	80, 149, 215
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	82, 217
BstDEI	CTNAG	3 cut(s)	25, 33, 50
BstDSI	CCRYGG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 200, 209, 218
BstV1I	GCAGC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	82, 217
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	3 cut(s)	80, 149, 215
CviAII	CATG	2 cut(s)	8, 229
CviJI	RGCY	3 cut(s)	5, 46, 123
CviKI_1	RGCY	3 cut(s)	5, 46, 123
DdeI	CTNAG	3 cut(s)	25, 33, 50
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	11, 232
FaiI	YATR	2 cut(s)	9, 230
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	7, 228
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	147, 213
Fsp4HI	GCNGC	2 cut(s)	147, 213
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	147, 213
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	4 cut(s)	81, 150, 159, 216
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	11, 232
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	29, 198
HpaII	CCGG	4 cut(s)	81, 150, 159, 216
HphI	GGTGA	2 cut(s)	67, 118
Hpy188I	TCNGA	2 cut(s)	34, 118
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 200, 209, 218
HpyF3I	CTNAG	3 cut(s)	25, 33, 50
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	11, 232
HspAI	GCGC	1 cut(s)	219
KasI	GGCGCC	1 cut(s)	218
KroI	GCCGGC	2 cut(s)	80, 215
KroNI	GCCGGC	2 cut(s)	82, 217
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	5 cut(s)	94, 163, 172, 180, 229
Lsp1109I	GCAGC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	23
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	23, 207
MnlI	CCTC	3 cut(s)	7, 134, 187
MreI	CGCCGGCG	2 cut(s)	80, 215
MroNI	GCCGGC	2 cut(s)	80, 215
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	4 cut(s)	81, 150, 159, 216
MwoI	GCNNNNNNNGC	4 cut(s)	146, 200, 209, 218
NaeI	GCCGGC	2 cut(s)	82, 217
NarI	GGCGCC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	87
NgoMIV	GCCGGC	2 cut(s)	80, 215
NlaIII	CATG	2 cut(s)	11, 232
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	7
PdiI	GCCGGC	2 cut(s)	82, 217
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	148, 214
PleI	GAGTC	2 cut(s)	23, 206
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	2 cut(s)	23, 206
PspN4I	GGNNCC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	2 cut(s)	147, 213
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	23, 207
SetI	ASST	1 cut(s)	176
SfoI	GGCGCC	1 cut(s)	220
SgrAI	CRCCGGYG	2 cut(s)	80, 215
SmiMI	CAYNNNNRTG	1 cut(s)	227
SsiI	CCGC	4 cut(s)	78, 192, 213, 240
SspDI	GGCGCC	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	179
TauI	GCSGC	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.