Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0031011

Physical Location & Seq

Genomic Coordinates Forward (+)

147361 .. 147651

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgctctcctgccattacattcaaaagggagttctattcaattccccaccttactccatcaacgacctcgtcacatctctgaagcaatctttcttcgttgccctgactcacttcccggctctcgccggccgtttcgagaccgactccgactgggtacgtccacatcttatgaaacgacgccgacgccgatttcatctagcccaaggccaaacacctaaccgtcgacggcatcctgcctcccaatggcaacgttcctcattgaagtcaagattaaaagagattaacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

96

Amino Acids

11.36

Weight (kDa)

11.56

Isoelectric Point (pI)

92.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031011)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000218.1_g000038
rosa_samantha	Rh5AG336100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AclI	AACGTT	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	178, 184
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	23, 40, 262
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	127, 205
AsuC2I	CCSGG	1 cut(s)	116
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	2 cut(s)	114, 242
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	2 cut(s)	178, 184
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	155
BseX3I	CGGCCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	129, 207
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	116, 126
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	129, 207
Bso31I	GGTCTC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	129, 207
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	202
BssNI	GRCGYC	2 cut(s)	178, 184
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	221
BstACI	GRCGYC	2 cut(s)	178, 184
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	131
BstMCI	CGRYCG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	114
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	129, 207
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	125
CseI	GACGC	2 cut(s)	186, 192
Csp6I	GTAC	1 cut(s)	155
CviJI	RGCY	4 cut(s)	119, 129, 200, 207
CviKI_1	RGCY	4 cut(s)	119, 129, 200, 207
CviQI	GTAC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	127
EagI	CGGCCG	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaiI	YATR	1 cut(s)	170
FblI	GTMKAC	1 cut(s)	223
FokI	GGATG	1 cut(s)	216
FspBI	CTAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	129, 207
HapII	CCGG	2 cut(s)	116, 126
HgaI	GACGC	2 cut(s)	186, 192
Hin1I	GRCGYC	2 cut(s)	178, 184
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	106, 143
HpaII	CCGG	2 cut(s)	116, 126
Hpy166II	GTNNAC	2 cut(s)	161, 224
Hpy188I	TCNGA	2 cut(s)	81, 148
Hpy188III	TCNNGA	2 cut(s)	136, 267
Hpy8I	GTNNAC	2 cut(s)	161, 224
Hpy99I	CGWCG	4 cut(s)	180, 186, 225, 228
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	157, 250
HpySE526I	ACGT	2 cut(s)	157, 250
Hsp92I	GRCGYC	2 cut(s)	178, 184
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	22, 116, 129, 136, 139, 246
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	2 cut(s)	157, 250
MaeIII	GTNAC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	2 cut(s)	40, 286
MlyI	GAGTC	2 cut(s)	100, 137
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	77, 247, 265
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	2 cut(s)	272, 282
MspI	CCGG	2 cut(s)	116, 126
MspR9I	CCNGG	1 cut(s)	116
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	116
NgoMIV	GCCGGC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	127
PflFI	GACNNNGTC	1 cut(s)	68
PleI	GAGTC	2 cut(s)	100, 137
PpsI	GAGTC	2 cut(s)	100, 137
Psp1406I	AACGTT	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	272, 282
SchI	GAGTC	2 cut(s)	100, 137
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	5 cut(s)	52, 69, 160, 217, 253
SfaNI	GCATC	1 cut(s)	238
SgrDI	CGTCGACG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	40, 286
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	160, 253
TaqI	TCGA	2 cut(s)	135, 223
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	40, 286
Tru1I	TTAA	2 cut(s)	272, 282
Tru9I	TTAA	2 cut(s)	272, 282
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	182, 185
Tth111I	GACNNNGTC	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.