Rh5AG336100

BAHD acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0031011
Physical Location & Seq
Forward (+)
54062414 .. 54065687
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG336100.1

Sequence Viewer

Length: 372 bp
ATGCTGGTTGCGCACGGCGAGGCCAAAATTGGTTATGAACACATGTTAGCTGCAGCACCATCAGAAGGTAAGAACAACAGATTCATGTCTAGATTGAGTTTATCCCAACCAGAAATCAACAATCAAATTCCTCAAGCTTTGGTCTCCGACCTTCCCATGCTCTTCTGCCATTACATTCAGAAGGGTGTTATGTTCAATTCCCTACCTTACTCTATCAAAAACCTTGTCACTTATCTGAAGCAATCTTTCTCCGTTGCCCTGACTCACTTCCTGGCGCTCATCGGCGGTTTCGACACCGACTCCGACAGGTACGTCCACATCGTCTGTAACGACGCTGGCGCCGATTTCATCCAGCCAAGGCCAAAGACCTAA

Protein Analysis

123

Amino Acids

13.72

Weight (kDa)

6.95

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 49 - 118 1.7e-10 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031011)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000218.1_g000038
rosa_samantha Rh5AG336100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
Acc16I TGCGCA 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 50, 137
AluI AGCT 2 cut(s) 50, 137
Alw26I GTCTC 1 cut(s) 148
AoxI GGCC 2 cut(s) 21, 359
ApeKI GCWGC 2 cut(s) 50, 53
ApoI RAATTY 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspLEI GCGC 3 cut(s) 13, 277, 341
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 37, 65
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 2 cut(s) 278, 342
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 37, 65
BshFI GGCC 2 cut(s) 23, 361
BshNI GGYRCC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 2 cut(s) 23, 361
Bso31I GGTCTC 1 cut(s) 148
BspACI CCGC 1 cut(s) 285
BspANI GGCC 2 cut(s) 23, 361
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 356
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 337
BstF5I GGATG 1 cut(s) 348
BstH2I RGCGCY 2 cut(s) 278, 342
BstHHI GCGC 3 cut(s) 13, 277, 341
BstMAI GTCTC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 37, 65
BsuRI GGCC 2 cut(s) 23, 361
BtsCI GGATG 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 3 cut(s) 13, 277, 341
CseI GACGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 43, 85, 157
CviJI RGCY 5 cut(s) 23, 50, 137, 355, 361
CviKI_1 RGCY 5 cut(s) 23, 50, 137, 355, 361
CviQI GTAC 1 cut(s) 310
DinI GGCGCC 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 356
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 3 cut(s) 46, 88, 160
FaiI YATR 5 cut(s) 36, 44, 86, 158, 191
FatI CATG 3 cut(s) 42, 84, 156
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 51, 54
FspBI CTAG 1 cut(s) 90
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 3 cut(s) 12, 276, 340
GluI GCNGC 2 cut(s) 51, 54
HaeII RGCGCY 2 cut(s) 278, 342
HaeIII GGCC 2 cut(s) 23, 361
HgaI GACGC 1 cut(s) 341
HhaI GCGC 3 cut(s) 13, 277, 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 46, 88, 160
Hin6I GCGC 3 cut(s) 11, 275, 339
HinP1I GCGC 3 cut(s) 11, 275, 339
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 3 cut(s) 81, 262, 299
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 5 cut(s) 64, 148, 180, 237, 304
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 3 cut(s) 59, 161, 175
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 46, 88, 160
HspAI GCGC 3 cut(s) 11, 275, 339
KasI GGCGCC 1 cut(s) 338
LguI GCTCTTC 1 cut(s) 167
LpnPI CCDG 7 cut(s) 123, 257, 272, 284, 292, 321, 365
Lsp1109I GCAGC 2 cut(s) 37, 65
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 226, 326
MboII GAAGA 1 cut(s) 154
MluCI AATT 3 cut(s) 27, 126, 196
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 2 cut(s) 256, 293
MmeI TCCRAC 2 cut(s) 171, 327
MnlI CCTC 2 cut(s) 13, 141
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 339
NlaIII CATG 3 cut(s) 46, 88, 160
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 12
NspI RCATGY 1 cut(s) 46
PciI ACATGT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 4 cut(s) 288, 318, 327, 339
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 52, 55
PleI GAGTC 2 cut(s) 256, 293
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 2 cut(s) 256, 293
PscI ACATGT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 340
PstI CTGCAG 1 cut(s) 55
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 167
SatI GCNGC 2 cut(s) 51, 54
SchI GAGTC 2 cut(s) 256, 293
ScrFI CCNGG 1 cut(s) 272
SetI ASST 9 cut(s) 52, 70, 139, 153, 208, 225, 311, 315, 371
SfcI CTRYAG 1 cut(s) 51
SfoI GGCGCC 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 27, 126, 196
SsiI CCGC 1 cut(s) 285
SspDI GGCGCC 1 cut(s) 338
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 356
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 27, 126, 196
TfiI GAWTC 1 cut(s) 81
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 50, 53
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 51, 73, 337
TspGWI ACGGA 1 cut(s) 241
XapI RAATTY 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 46
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.