Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000226.1

Orthogroup ID

OG0031012

Physical Location & Seq

Genomic Coordinates Forward (+)

83399 .. 84243

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgccggaaaaccaacacaagaatttccctgcgctggaggcaaacacaagattgttgatttgtagttgggacatggaaagagtgttcttgagttgggatgatcagtatcagtgtgagagagccaaagatggtgaagccaacggtggagacaccttgtctgtcgctgttatctcaaacttggacatggtgagttcgaattattgtttatatttacaggccagaaaacgcggtgcagacaatgacaacttctttgaccccatcgtgcgaaaggacgctctcagcaaggccgtagtgcctttctacccgtttggctggttgcctgaagcgaaacaacatgtccgtatcgaaatcgattgcaatgcagactacgtgttgtttgttttggccgatagcagccattgcatggatcgtaagatttttaatgaacttatcaatactcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

147

Amino Acids

16.9

Weight (kDa)

4.85

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031012)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000226.1_g000022
rosa_samantha	Rh5AG481200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	1 cut(s)	228
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	34, 403
AflIII	ACRYGT	2 cut(s)	334, 369
AhdI	GACNNNNNGTC	1 cut(s)	154
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	216, 285, 384
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	143, 199
AsuII	TTCGAA	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	122, 266
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
BmeRI	GACNNNNNGTC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 403
Bse3DI	GCAATG	2 cut(s)	364, 397
Bse8I	GATNNNNATC	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	351
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	34, 403
BseMI	GCAATG	2 cut(s)	364, 397
BseMII	CTCAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	405
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	218, 287, 386
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	34, 403
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	218, 287, 386
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	100, 406
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	218, 287, 386
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	364, 397
BssMI	GATC	2 cut(s)	100, 406
Bst4CI	ACNGT	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	103, 409
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	100, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 399
BstNSI	RCATGY	1 cut(s)	338
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	218, 287, 386
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	281
CviAII	CATG	4 cut(s)	73, 184, 335, 403
CviJI	RGCY	7 cut(s)	122, 137, 218, 287, 312, 386, 396
CviKI_1	RGCY	7 cut(s)	122, 137, 218, 287, 312, 386, 396
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	2 cut(s)	102, 408
DpnII	GATC	2 cut(s)	100, 406
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	384
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	342
FaeI	CATG	4 cut(s)	76, 187, 338, 406
FaiI	YATR	5 cut(s)	74, 185, 208, 336, 404
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	72, 183, 334, 402
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	394
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	218, 287, 386
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	76, 187, 338, 406
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	143, 199
Hpy188III	TCNNGA	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	233, 357, 362, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 399
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	76, 187, 338, 406
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 406
LpnPI	CCDG	7 cut(s)	18, 20, 42, 200, 232, 298, 333
Lsp1109I	GCAGC	1 cut(s)	405
MaeII	ACGT	1 cut(s)	369
MalI	GATC	2 cut(s)	102, 408
MboI	GATC	2 cut(s)	100, 406
MluCI	AATT	2 cut(s)	22, 196
MnlI	CCTC	1 cut(s)	31
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	38, 399
NdeII	GATC	2 cut(s)	100, 406
NlaIII	CATG	4 cut(s)	76, 187, 338, 406
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	194
PciI	ACATGT	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	370
PscI	ACATGT	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	2 cut(s)	100, 406
SetI	ASST	2 cut(s)	155, 372
SfuI	TTCGAA	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	2 cut(s)	22, 196
SsiI	CCGC	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	194, 345, 351
TasI	AATT	2 cut(s)	22, 196
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	393
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.