Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0031012

Physical Location & Seq

Genomic Coordinates Reverse (-)

82499035 .. 82499385

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG481200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCAGTCAGCATCAGCGTGGGGGAGCCAAAGATGGTGAAGCCAACGGTGGAGACGCCTTGTCTGTCGCTGTTGATCTCAAACTTGGACATGGCCAGAAAACGCGGTGCAGACAATGACAACTTCTTTGACCCCATCGTGCGAAAGGACGCTCTCAGCAAGGCCGTAGTGCCTTTCTACCCGTTTGGCTGGTTGCCTGAAGCGAGACAACATGTCCGTATCGAAATCAATTGCAATGCAAACTACGTGTTGTTTGTTTTGGCCGATAGCAGCCATTGCATGGATCGTAAGATTTTTAATGAACTTATCAATACTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

6.71

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031012)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000226.1_g000022
rosa_samantha	Rh5AG481200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	2 cut(s)	93, 261
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflIII	ACRYGT	2 cut(s)	211, 246
AhdI	GACNNNNNGTC	2 cut(s)	60, 212
Alw26I	GTCTC	2 cut(s)	47, 199
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	3 cut(s)	93, 162, 261
ApeKI	GCWGC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AsuHPI	GGTGA	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	28, 143
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	47, 199
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmeRI	GACNNNNNGTC	2 cut(s)	60, 212
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse3DI	GCAATG	2 cut(s)	241, 274
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	2 cut(s)	241, 274
BseMII	CTCAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	95, 164, 263
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	47, 199
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	95, 164, 263
Bsp143I	GATC	2 cut(s)	75, 283
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	95, 164, 263
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	241, 274
BssMI	GATC	2 cut(s)	75, 283
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	78, 286
BstMAI	GTCTC	2 cut(s)	47, 199
BstMBI	GATC	2 cut(s)	75, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	215
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	95, 164, 263
CseI	GACGC	2 cut(s)	64, 158
CviAII	CATG	3 cut(s)	91, 212, 280
CviJI	RGCY	7 cut(s)	28, 43, 95, 164, 189, 263, 273
CviKI_1	RGCY	7 cut(s)	28, 43, 95, 164, 189, 263, 273
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	77, 285
DpnII	GATC	2 cut(s)	75, 283
DriI	GACNNNNNGTC	2 cut(s)	60, 212
EaeI	YGGCCR	2 cut(s)	93, 261
Eam1105I	GACNNNNNGTC	2 cut(s)	60, 212
Eco57I	CTGAAG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	3 cut(s)	94, 215, 283
FaiI	YATR	3 cut(s)	92, 213, 281
FatI	CATG	3 cut(s)	90, 211, 279
Fnu4HI	GCNGC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	95, 164, 263
HgaI	GACGC	2 cut(s)	64, 158
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	94, 215, 283
HphI	GGTGA	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	110, 234, 239, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	94, 215, 283
Kzo9I	GATC	2 cut(s)	75, 283
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	109, 175, 210
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	246
MalI	GATC	2 cut(s)	77, 285
MboI	GATC	2 cut(s)	75, 283
MfeI	CAATTG	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	95
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	95
MunI	CAATTG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	75, 283
NlaIII	CATG	3 cut(s)	94, 215, 283
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	247
PscI	ACATGT	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	75, 283
SetI	ASST	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	280
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.