Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0031013

Physical Location & Seq

Genomic Coordinates Reverse (-)

52722 .. 53918

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggggttgtcggagcagtaccagccgctactcctcggacctgactcatattcccggattcctgacttgtcacccgctgcaattgaagaatttttggagcgaaggcctatagcactaaggtggtggcctaggctagtggtatgggagtcgaggctgctatggattttatccggttcatctatcgtagtttcgcttttcaattacatgctcagctttgtcacattgatgttttgtggccatctgagtgcattggagcttgctggagcctctattgcaagtgtgggaatccaaggtcttgcttatgggattatgttgggcatggcgagtgctgtacaaactgtttgtgggcaagcctatggagccaaacactacggagcattggggataatatgccaaagagcaatcgtcttgcacttgggagcagcaatcctgcttacatttttgtactggtggtcaggtccaatactcgttgccatgggacaatcagaaagtatagcagaacagggtcaaatctttgcgcgcggcttaatccctcaactctatgcatttgccataaactgcccacaacagaggaaaggaaacctgacaggaactttagtttcccttccccactggaaagacaagggaattgatttcccttccgtgaaccaaacgaggcctaagtttagcttaattactttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

227

Amino Acids

24.93

Weight (kDa)

8.72

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	60 - 188	4.3e-24	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031013)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000233.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	520, 522
AciI	CCGC	3 cut(s)	26, 75, 522
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	3 cut(s)	20, 333, 446
AgsI	TTSAA	2 cut(s)	86, 199
AleI	CACNNNNGTG	1 cut(s)	118
AluBI	AGCT	3 cut(s)	213, 256, 669
AluI	AGCT	3 cut(s)	213, 256, 669
AoxI	GGCC	4 cut(s)	104, 125, 235, 656
ApeKI	GCWGC	3 cut(s)	77, 154, 422
ApoI	RAATTY	1 cut(s)	89
AspA2I	CCTAGG	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	520, 522
AspS9I	GGNCC	2 cut(s)	38, 458
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	38, 458
AvrII	CCTAGG	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	64, 141, 434
BccI	CCATC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	2 cut(s)	129, 134
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	5 cut(s)	26, 78, 155, 423, 523
BlnI	CCTAGG	1 cut(s)	128
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	5 cut(s)	27, 79, 156, 424, 524
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	38, 458
BmgT120I	GGNCC	2 cut(s)	38, 458
BmiI	GGNNCC	2 cut(s)	265, 361
BmrFI	CCNGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	4 cut(s)	34, 128, 289, 474
BsaWI	WCCGGW	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	452, 617
BseDI	CCNNGG	4 cut(s)	34, 128, 289, 474
BseMII	CTCAG	2 cut(s)	223, 233
BseNI	ACTGG	2 cut(s)	452, 617
BsePI	GCGCGC	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	64, 141, 434
Bsh1236I	CGCG	2 cut(s)	520, 522
BshFI	GGCC	4 cut(s)	106, 127, 237, 658
BsiSI	CCGG	2 cut(s)	55, 171
BslFI	GGGAC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	4 cut(s)	106, 127, 237, 658
Bsp1407I	TGTACA	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	3 cut(s)	26, 75, 522
BspANI	GGCC	4 cut(s)	106, 127, 237, 658
BspCNI	CTCAG	2 cut(s)	222, 234
BspFNI	CGCG	2 cut(s)	520, 522
BspLI	GGNNCC	2 cut(s)	265, 361
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	452, 617
BssECI	CCNNGG	4 cut(s)	34, 128, 289, 474
BssHII	GCGCGC	1 cut(s)	518
BssT1I	CCWWGG	3 cut(s)	128, 289, 474
Bst4CI	ACNGT	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	258, 351, 520
BstDEI	CTNAG	4 cut(s)	116, 209, 242, 660
BstDSI	CCRYGG	1 cut(s)	474
BstFNI	CGCG	2 cut(s)	520, 522
BstHHI	GCGC	2 cut(s)	520, 522
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 272, 359
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	520, 522
BstV1I	GCAGC	3 cut(s)	64, 141, 434
BsuRI	GGCC	4 cut(s)	106, 127, 237, 658
BtgI	CCRYGG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	258, 351, 520
CfoI	GCGC	2 cut(s)	520, 522
Cfr13I	GGNCC	2 cut(s)	38, 458
Csp6I	GTAC	3 cut(s)	19, 332, 445
CviAII	CATG	3 cut(s)	205, 319, 475
CviQI	GTAC	3 cut(s)	19, 332, 445
DdeI	CTNAG	4 cut(s)	116, 209, 242, 660
EaeI	YGGCCR	1 cut(s)	235
Eco130I	CCWWGG	3 cut(s)	128, 289, 474
Eco147I	AGGCCT	2 cut(s)	106, 658
Eco47I	GGWCC	2 cut(s)	38, 458
EcoT14I	CCWWGG	3 cut(s)	128, 289, 474
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	3 cut(s)	128, 289, 474
FaeI	CATG	3 cut(s)	208, 322, 478
FalI	AAGNNNNNCTT	1 cut(s)	653
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	3 cut(s)	204, 318, 474
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	5 cut(s)	26, 78, 155, 423, 523
Fsp4HI	GCNGC	5 cut(s)	26, 78, 155, 423, 523
FspBI	CTAG	2 cut(s)	129, 134
GlaI	GCGC	2 cut(s)	519, 521
GluI	GCNGC	5 cut(s)	26, 78, 155, 423, 523
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	106, 127, 237, 658
HapII	CCGG	2 cut(s)	55, 171
HhaI	GCGC	2 cut(s)	520, 522
Hin1II	CATG	3 cut(s)	208, 322, 478
Hin6I	GCGC	2 cut(s)	518, 520
HinP1I	GCGC	2 cut(s)	518, 520
HinfI	GANTC	4 cut(s)	44, 58, 146, 285
HpaII	CCGG	2 cut(s)	55, 171
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	13, 38, 243, 487
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	3 cut(s)	96, 614, 648
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	80, 248, 275, 412, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 272, 359
HpyF3I	CTNAG	4 cut(s)	116, 209, 242, 660
Hsp92II	CATG	3 cut(s)	208, 322, 478
HspAI	GCGC	2 cut(s)	518, 520
LmnI	GCTCC	7 cut(s)	13, 97, 253, 263, 359, 374, 419
Lsp1109I	GCAGC	3 cut(s)	64, 141, 434
MaeI	CTAG	2 cut(s)	129, 134
MaeIII	GTNAC	2 cut(s)	69, 217
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	5 cut(s)	81, 89, 199, 627, 672
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	38, 155
MnlI	CCTC	6 cut(s)	44, 144, 277, 543, 564, 648
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	2 cut(s)	527, 671
MslI	CAYNNNNRTG	3 cut(s)	118, 224, 243
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	55, 171
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	81
MvnI	CGCG	2 cut(s)	520, 522
MwoI	GCNNNNNNNGC	3 cut(s)	22, 272, 359
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	474
NlaIII	CATG	3 cut(s)	208, 322, 478
NlaIV	GGNNCC	2 cut(s)	265, 361
NmuCI	GTSAC	2 cut(s)	69, 217
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	118
PauI	GCGCGC	1 cut(s)	518
PceI	AGGCCT	2 cut(s)	106, 658
PfeI	GAWTC	2 cut(s)	58, 285
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	27, 79, 156, 424, 524
PleI	GAGTC	2 cut(s)	38, 154
PpsI	GAGTC	2 cut(s)	38, 154
PspN4I	GGNNCC	2 cut(s)	265, 361
PspPI	GGNCC	2 cut(s)	38, 458
PteI	GCGCGC	1 cut(s)	518
RsaI	GTAC	3 cut(s)	20, 333, 446
RsaNI	GTAC	3 cut(s)	19, 332, 445
RseI	CAYNNNNRTG	3 cut(s)	118, 224, 243
SaqAI	TTAA	2 cut(s)	527, 671
SatI	GCNGC	5 cut(s)	26, 78, 155, 423, 523
Sau96I	GGNCC	2 cut(s)	38, 458
SchI	GAGTC	2 cut(s)	38, 155
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	8 cut(s)	43, 122, 215, 258, 295, 460, 585, 671
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	38, 458
SmiMI	CAYNNNNRTG	3 cut(s)	118, 224, 243
Sse9I	AATT	5 cut(s)	81, 89, 199, 627, 672
SseBI	AGGCCT	2 cut(s)	106, 658
SsiI	CCGC	3 cut(s)	26, 75, 522
SspMI	CTAG	2 cut(s)	129, 134
StuI	AGGCCT	2 cut(s)	106, 658
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	3 cut(s)	128, 289, 474
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	149
TasI	AATT	5 cut(s)	81, 89, 199, 627, 672
TatI	WGTACW	2 cut(s)	331, 444
TauI	GCSGC	2 cut(s)	28, 525
TfiI	GAWTC	2 cut(s)	58, 285
Tru1I	TTAA	2 cut(s)	527, 671
Tru9I	TTAA	2 cut(s)	527, 671
TscAI	CASTG	1 cut(s)	617
TseFI	GTSAC	2 cut(s)	69, 217
TseI	GCWGC	3 cut(s)	77, 154, 422
Tsp45I	GTSAC	2 cut(s)	69, 217
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	2 cut(s)	387, 631
TspRI	CASTG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	38, 458
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	208
XmaJI	CCTAGG	1 cut(s)	128
XspI	CTAG	2 cut(s)	129, 134
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.