Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0031013

Physical Location & Seq

Genomic Coordinates Forward (+)

16957670 .. 16959070

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGTCGGAGCAGTACCAGCCGCTACTCCTCAGACCTGATTCATATTCCCGGATTCCTGACTTGTCATCCGCTGCGATTGAAGAATTTTTGGAGCGAAGGCCTATAGCACTAAGGTGGTGGCCTAGGCTAGTGGCATGGGAGTCGAGGCTGCTATGGATTTTATCCGGTTCATCTATCGTAGTTTCGCTTTTCAATTACATGCTCAGCTTTGTCACATTGATGTTTTGTGGCCATCTAAGTGCATTGGAGCTTGCTGGAGCCTCTATTGAAAGTGTGGGAATCCAAGGTCTTGCTTATGGGATTATGTTGGGCATGGCGAGTGCTGTACAAACTGTTTGTGGGCAAGCCTATGGGGCCAAACACTACGGAGCATTGGGGATAATATGCCAAAGAGCAATCGTCTTGCACTTGGGAGCAGCAATCCTGCTTACATTTTTGTACTGGTGGTCAGGTCCAATACTCGTAGCCATGGGACAATCAGAGAGTATAGCAGAACAGGGTCAGATCTTTGCGCGCGGCTTAATCCCTCAACTCTATGCATTTGCCATAAACTGCCCACAACAGAGGTTCCTTCAGGCACAGAACGTAGTGAACCCTTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

202

Amino Acids

22.21

Weight (kDa)

6.81

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	59 - 200	4.1e-26	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0031013)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000233.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	517, 519
AciI	CCGC	3 cut(s)	23, 72, 519
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	3 cut(s)	17, 330, 443
AgsI	TTSAA	3 cut(s)	83, 196, 272
AleI	CACNNNNGTG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	210, 253
AluI	AGCT	2 cut(s)	210, 253
AoxI	GGCC	4 cut(s)	101, 122, 232, 357
ApeKI	GCWGC	3 cut(s)	74, 151, 419
ApoI	RAATTY	1 cut(s)	86
AspA2I	CCTAGG	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	517, 519
AspS9I	GGNCC	2 cut(s)	357, 455
AsuC2I	CCSGG	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	455
AvrII	CCTAGG	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	61, 138, 431
BccI	CCATC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BcnI	CCSGG	1 cut(s)	52
BfaI	CTAG	2 cut(s)	126, 131
BfmI	CTRYAG	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	5 cut(s)	23, 75, 152, 420, 520
BlnI	CCTAGG	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	5 cut(s)	24, 76, 153, 421, 521
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	357, 455
BmiI	GGNNCC	3 cut(s)	262, 358, 572
BmrFI	CCNGG	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	125, 286, 471
BsaWI	WCCGGW	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	125, 286, 471
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	46, 220
BseNI	ACTGG	1 cut(s)	449
BsePI	GCGCGC	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	61, 138, 431
Bsh1236I	CGCG	2 cut(s)	517, 519
BshFI	GGCC	4 cut(s)	103, 124, 234, 359
BsiSI	CCGG	2 cut(s)	52, 168
BslFI	GGGAC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	4 cut(s)	103, 124, 234, 359
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	507
Bsp1720I	GCTNAGC	1 cut(s)	206
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	3 cut(s)	23, 72, 519
BspANI	GGCC	4 cut(s)	103, 124, 234, 359
BspCNI	CTCAG	2 cut(s)	45, 219
BspFNI	CGCG	2 cut(s)	517, 519
BspLI	GGNNCC	3 cut(s)	262, 358, 572
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	3 cut(s)	125, 286, 471
BssHII	GCGCGC	1 cut(s)	515
BssMI	GATC	1 cut(s)	507
BssT1I	CCWWGG	3 cut(s)	125, 286, 471
Bst4CI	ACNGT	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	328
BstC8I	GCNNGC	3 cut(s)	255, 348, 517
BstDEI	CTNAG	4 cut(s)	32, 113, 206, 239
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	2 cut(s)	517, 519
BstHHI	GCGC	2 cut(s)	517, 519
BstKTI	GATC	1 cut(s)	510
BstMBI	GATC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 356
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	517, 519
BstV1I	GCAGC	3 cut(s)	61, 138, 431
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	103, 124, 234, 359
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	68
Cac8I	GCNNGC	3 cut(s)	255, 348, 517
CfoI	GCGC	2 cut(s)	517, 519
Cfr13I	GGNCC	2 cut(s)	357, 455
Csp6I	GTAC	3 cut(s)	16, 329, 442
CviAII	CATG	4 cut(s)	138, 202, 316, 472
CviQI	GTAC	3 cut(s)	16, 329, 442
DdeI	CTNAG	4 cut(s)	32, 113, 206, 239
DpnI	GATC	1 cut(s)	509
DpnII	GATC	1 cut(s)	507
EaeI	YGGCCR	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	125, 286, 471
Eco147I	AGGCCT	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	560
EcoT14I	CCWWGG	3 cut(s)	125, 286, 471
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	3 cut(s)	125, 286, 471
FaeI	CATG	4 cut(s)	141, 205, 319, 475
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	4 cut(s)	137, 201, 315, 471
Fnu4HI	GCNGC	5 cut(s)	23, 75, 152, 420, 520
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	23, 75, 152, 420, 520
FspBI	CTAG	2 cut(s)	126, 131
GlaI	GCGC	2 cut(s)	516, 518
GluI	GCNGC	5 cut(s)	23, 75, 152, 420, 520
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	4 cut(s)	103, 124, 234, 359
HapII	CCGG	2 cut(s)	52, 168
HhaI	GCGC	2 cut(s)	517, 519
Hin1II	CATG	4 cut(s)	141, 205, 319, 475
Hin6I	GCGC	2 cut(s)	515, 517
HinP1I	GCGC	2 cut(s)	515, 517
HinfI	GANTC	4 cut(s)	41, 55, 143, 282
HpaII	CCGG	2 cut(s)	52, 168
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	4 cut(s)	10, 35, 484, 507
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	93, 584
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	245, 409, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 356
HpyF3I	CTNAG	4 cut(s)	32, 113, 206, 239
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	141, 205, 319, 475
HspAI	GCGC	2 cut(s)	515, 517
Kzo9I	GATC	1 cut(s)	507
LmnI	GCTCC	6 cut(s)	10, 94, 250, 260, 371, 416
Lsp1109I	GCAGC	3 cut(s)	61, 138, 431
MaeI	CTAG	2 cut(s)	126, 131
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	509
MboI	GATC	1 cut(s)	507
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	2 cut(s)	86, 196
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	41, 141, 274, 540, 561
Mox20I	TGGCCA	1 cut(s)	234
Mph1103I	ATGCAT	1 cut(s)	544
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	3 cut(s)	115, 221, 240
Msp20I	TGGCCA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	52, 168
MspR9I	CCNGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	517, 519
MwoI	GCNNNNNNNGC	2 cut(s)	19, 356
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	507
NlaIII	CATG	4 cut(s)	141, 205, 319, 475
NlaIV	GGNNCC	3 cut(s)	262, 358, 572
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	115
PauI	GCGCGC	1 cut(s)	515
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	41, 55, 282
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	24, 76, 153, 421, 521
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	262, 358, 572
PspPI	GGNCC	2 cut(s)	357, 455
PsuI	RGATCY	1 cut(s)	507
PteI	GCGCGC	1 cut(s)	515
RsaI	GTAC	3 cut(s)	17, 330, 443
RsaNI	GTAC	3 cut(s)	16, 329, 442
RseI	CAYNNNNRTG	3 cut(s)	115, 221, 240
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	5 cut(s)	23, 75, 152, 420, 520
Sau3AI	GATC	1 cut(s)	507
Sau96I	GGNCC	2 cut(s)	357, 455
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	8 cut(s)	40, 119, 212, 255, 292, 457, 572, 591
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	3 cut(s)	115, 221, 240
Sse9I	AATT	2 cut(s)	86, 196
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	23, 72, 519
SspMI	CTAG	2 cut(s)	126, 131
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	3 cut(s)	125, 286, 471
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	86, 196
TatI	WGTACW	2 cut(s)	328, 441
TauI	GCSGC	2 cut(s)	25, 522
TfiI	GAWTC	3 cut(s)	41, 55, 282
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	74, 151, 419
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	33, 162
TspGWI	ACGGA	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	125
XspI	CTAG	2 cut(s)	126, 131
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.