Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0031014

Physical Location & Seq

Genomic Coordinates Forward (+)

435489 .. 435971

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgcttctccaaacctcatctcaccacctcaccgcctctctctcttcctccctctcctactctcgtcccctcccctccaaaattccatctttgaccctccctcgttccgtaaattaccaccggctcaccatctcctcctcctccatatcccaagcccacaactatggcactgtcgactacgagaggaggcccatcgtcaaatggaacgccatataccgcaagatatcgctgctggctgacgacccggaatcgagctcttcgagtgttttgaatcagtgggagaaggagggcaagaagcttagcaagtgggagctttgtagggttgttaaggagttgaggaagtacaagcgctatgctagagctcttgaggtaattagatcaagtattttgtgggttttgaatagtggctgtgtcatgttttttgcttcaattgctttggttggaatggttttggtgttgtgggactttgatcaattggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR TPR_8

Protein Analysis

160

Amino Acids

18.28

Weight (kDa)

9.76

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031014)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8353625.1_g000001 Rmu_ssc0000255.1_g000083

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	2 cut(s)	33, 217
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	1 cut(s)	344
AfeI	AGCGCT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	271, 400, 429
AluBI	AGCT	4 cut(s)	255, 298, 313, 362
AluI	AGCT	4 cut(s)	255, 298, 313, 362
Alw21I	GWGCWC	2 cut(s)	257, 364
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	14, 22, 118
BanII	GRGCYC	2 cut(s)	257, 364
Bbv12I	GWGCWC	2 cut(s)	257, 364
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	3 cut(s)	94, 137, 200
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	1 cut(s)	230
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	120
BseRI	GAGGAG	4 cut(s)	124, 127, 130, 199
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	257, 364
BsiSI	CCGG	2 cut(s)	121, 245
BslFI	GGGAC	2 cut(s)	51, 476
BsmFI	GGGAC	2 cut(s)	51, 476
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	257, 364
Bsp143I	GATC	2 cut(s)	377, 469
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	2 cut(s)	33, 217
BspANI	GGCC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	2 cut(s)	377, 469
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	49, 262
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	2 cut(s)	380, 472
BstMBI	GATC	2 cut(s)	377, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	168, 281
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	9 cut(s)	124, 155, 190, 236, 255, 298, 313, 362, 408
CviKI_1	RGCY	9 cut(s)	124, 155, 190, 236, 255, 298, 313, 362, 408
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	379, 471
DpnII	GATC	2 cut(s)	377, 469
Eam1104I	CTCTTC	2 cut(s)	49, 262
EarI	CTCTTC	2 cut(s)	49, 262
Ecl136II	GAGCTC	2 cut(s)	255, 362
Eco24I	GRGCYC	2 cut(s)	257, 364
Eco32I	GATATC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	2 cut(s)	255, 362
EcoICRI	GAGCTC	2 cut(s)	255, 362
EcoRV	GATATC	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	257, 364
FaeI	CATG	1 cut(s)	418
FaiI	YATR	6 cut(s)	146, 165, 212, 214, 354, 416
FaqI	GGGAC	2 cut(s)	51, 476
FatI	CATG	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	230
FriOI	GRGCYC	2 cut(s)	257, 364
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	121, 245
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	248, 271
HpaII	CCGG	2 cut(s)	121, 245
HphI	GGTGA	3 cut(s)	14, 22, 118
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	377, 469
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	134, 218, 258
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	357
MalI	GATC	2 cut(s)	379, 471
MboI	GATC	2 cut(s)	377, 469
MboII	GAAGA	2 cut(s)	36, 249
MfeI	CAATTG	2 cut(s)	429, 473
MhlI	GDGCHC	2 cut(s)	257, 364
MluCI	AATT	5 cut(s)	81, 112, 372, 429, 473
MmeI	TCCRAC	1 cut(s)	421
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	2 cut(s)	121, 245
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	2 cut(s)	429, 473
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	377, 469
NlaIII	CATG	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	248, 271
PkrI	GCNGC	1 cut(s)	231
Psp124BI	GAGCTC	2 cut(s)	257, 364
PspPI	GGNCC	1 cut(s)	189
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	2 cut(s)	257, 364
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	377, 469
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	257, 364
SetI	ASST	7 cut(s)	17, 30, 257, 300, 315, 364, 372
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	81, 112, 372, 429, 473
SsiI	CCGC	2 cut(s)	33, 217
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	2 cut(s)	257, 364
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	174, 251, 260
TasI	AATT	5 cut(s)	81, 112, 372, 429, 473
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	248, 271
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	175, 281
TseI	GCWGC	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	175, 281
XapI	RAATTY	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.