Rmu_ssc0000388.1_g000064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0031022
Physical Location & Seq
Forward (+)
308541 .. 308882
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000388.1_g000064.1.cds

Sequence Viewer

Length: 342 bp
atgagtaacctgaacagactggatttcgctccattaggaacaactggctctagatgtcacaagtgggttcgtgatgtcagccaacatctcgaggccgatggaatcctggatatgattctcgagtctagccaggacgtgctaactgttgagcaagctcaaggtttggaagcaaatagagcagccttagaggcaaataaggcagaagccatcatcctaatgactcgtcatacggatgattcaccccagtacgagtatatgaataaagaagaccacagaaagctgtgggtctcactcaaagaaagatttgggaacgtctgtgactccctgcttcttgaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

113

Amino Acids

12.86

Weight (kDa)

4.96

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031022)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000388.1_g000064
rosa_samantha Rh6AG153000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 335
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 105, 129
AluBI AGCT 2 cut(s) 155, 280
AluI AGCT 2 cut(s) 155, 280
Alw26I GTCTC 1 cut(s) 292
Ama87I CYCGRG 2 cut(s) 89, 119
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 231
AvaI CYCGRG 2 cut(s) 89, 119
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 92, 215
BciT130I CCWGG 2 cut(s) 107, 131
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 51, 126
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 107, 131
BmeT110I CYCGRG 2 cut(s) 89, 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 107, 131
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 24, 49, 244
BseBI CCWGG 2 cut(s) 107, 131
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 3 cut(s) 24, 49, 244
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 2 cut(s) 89, 119
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 2 cut(s) 89, 119
BspANI GGCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 3 cut(s) 24, 49, 244
Bst2UI CCWGG 2 cut(s) 107, 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 176, 188, 197
BstNI CCWGG 2 cut(s) 107, 131
BstSCI CCNGG 2 cut(s) 105, 129
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 95
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 8 cut(s) 48, 81, 95, 129, 155, 182, 206, 280
CviKI_1 RGCY 8 cut(s) 48, 81, 95, 129, 155, 182, 206, 280
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 89, 119
EcoRII CCWGG 2 cut(s) 105, 129
FaiI YATR 5 cut(s) 113, 228, 255, 257, 340
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 51, 126
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 95
HinfI GANTC 6 cut(s) 102, 115, 122, 220, 236, 320
HphI GGTGA 1 cut(s) 231
Hpy188III TCNNGA 5 cut(s) 51, 71, 89, 119, 332
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 135, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 135, 312
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 5, 23, 30, 92, 116, 119, 143, 257, 338
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 2 cut(s) 51, 126
MaeII ACGT 2 cut(s) 135, 312
MaeIII GTNAC 3 cut(s) 5, 56, 317
MboII GAAGA 1 cut(s) 278
MlyI GAGTC 3 cut(s) 131, 214, 314
MnlI CCTC 2 cut(s) 85, 181
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 2 cut(s) 107, 131
MvaI CCWGG 2 cut(s) 107, 131
MwoI GCNNNNNNNGC 3 cut(s) 176, 188, 197
NmuCI GTSAC 2 cut(s) 56, 317
PaeR7I CTCGAG 2 cut(s) 89, 119
PfeI GAWTC 3 cut(s) 102, 115, 236
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 3 cut(s) 130, 214, 314
PpsI GAGTC 3 cut(s) 130, 214, 314
Psp6I CCWGG 2 cut(s) 105, 129
PspGI CCWGG 2 cut(s) 105, 129
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SatI GCNGC 1 cut(s) 180
SchI GAGTC 3 cut(s) 131, 214, 314
ScrFI CCNGG 2 cut(s) 107, 131
SetI ASST 6 cut(s) 12, 138, 157, 163, 282, 315
Sfr274I CTCGAG 2 cut(s) 89, 119
SlaI CTCGAG 2 cut(s) 89, 119
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
SspMI CTAG 2 cut(s) 51, 126
StyD4I CCNGG 2 cut(s) 105, 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 138, 315
TaqI TCGA 2 cut(s) 90, 120
TfiI GAWTC 3 cut(s) 102, 115, 236
TseFI GTSAC 2 cut(s) 56, 317
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 2 cut(s) 56, 317
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 50
XhoI CTCGAG 2 cut(s) 89, 119
XspI CTAG 2 cut(s) 51, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.